• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过元动力学和平均力积分揭示溶剂对β-断裂的影响

Unveiling Solvent Effects on β-Scissions through Metadynamics and Mean Force Integration.

作者信息

Serse Francesco, Bjola Antoniu, Salvalaglio Matteo, Pelucchi Matteo

机构信息

Department of Chemistry Materials and Chemical Engineering, Politecnico di Milano, Piazza Leonardo da Vinci 32, Milan 20133, Italy.

Thomas Young Centre and Department of Chemical Engineering, University College London, London WC1E 7JE, U.K.

出版信息

J Chem Theory Comput. 2024 Jul 23;20(14):6253-6262. doi: 10.1021/acs.jctc.4c00383. Epub 2024 Jul 3.

DOI:10.1021/acs.jctc.4c00383
PMID:38959515
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11271823/
Abstract

This study introduces a methodology that combines accelerated molecular dynamics and mean force integration to investigate solvent effects on chemical reaction kinetics. The newly developed methodology is applied to the β-scission of butyl acrylate (BA) dimer in polar (water) and nonpolar (xylene and BA monomer) solvents. The results show that solvation in both polar and nonpolar environments reduces the free energy barrier of activation by ∼4 kcal/mol and decreases the pre-exponential factor 2-fold. Employing a hybrid quantum mechanics/molecular mechanics approach with explicit solvent modeling, we compute kinetic rate constants that better match experimental measurements compared to previous gas-phase calculations. This methodology presents promising potential for accurately predicting kinetic rate constants in liquid-phase polymerization and depolymerization processes.

摘要

本研究介绍了一种结合加速分子动力学和平均力积分来研究溶剂对化学反应动力学影响的方法。新开发的方法应用于丙烯酸丁酯(BA)二聚体在极性(水)和非极性(二甲苯和BA单体)溶剂中的β-断裂反应。结果表明,在极性和非极性环境中的溶剂化作用使活化自由能垒降低了约4千卡/摩尔,并使指前因子降低了2倍。采用具有显式溶剂模型的量子力学/分子力学混合方法,我们计算出的动力学速率常数比之前的气相计算结果更符合实验测量值。该方法在准确预测液相聚合和解聚过程中的动力学速率常数方面具有广阔的应用前景。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/caa95a3286ed/ct4c00383_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/cae2b697e653/ct4c00383_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/2798475b6910/ct4c00383_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/40abf576effc/ct4c00383_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/4f4de3785ea1/ct4c00383_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/b0bcb781514d/ct4c00383_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/41876368c7e9/ct4c00383_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/caa95a3286ed/ct4c00383_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/cae2b697e653/ct4c00383_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/2798475b6910/ct4c00383_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/40abf576effc/ct4c00383_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/4f4de3785ea1/ct4c00383_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/b0bcb781514d/ct4c00383_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/41876368c7e9/ct4c00383_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb01/11271823/caa95a3286ed/ct4c00383_0007.jpg

相似文献

1
Unveiling Solvent Effects on β-Scissions through Metadynamics and Mean Force Integration.通过元动力学和平均力积分揭示溶剂对β-断裂的影响
J Chem Theory Comput. 2024 Jul 23;20(14):6253-6262. doi: 10.1021/acs.jctc.4c00383. Epub 2024 Jul 3.
2
Solvation Thermodynamics of Solutes in Water and Ionic Liquids Using the Multiscale Solvation-Layer Interface Condition Continuum Model.利用多尺度溶剂化层界面条件连续模型研究溶质在水和离子液体中的溶剂化热力学。
J Chem Theory Comput. 2022 Sep 13;18(9):5539-5558. doi: 10.1021/acs.jctc.2c00248. Epub 2022 Aug 24.
3
Combining the polarizable Drude force field with a continuum electrostatic Poisson-Boltzmann implicit solvation model.将极化 Drude 力场与连续静电 Poisson-Boltzmann 隐溶剂化模型相结合。
J Comput Chem. 2018 Aug 15;39(22):1707-1719. doi: 10.1002/jcc.25345. Epub 2018 May 8.
4
A multilayered-representation, quantum mechanical/molecular mechanics study of the CH(3)Cl + F(-) reaction in aqueous solution: the reaction mechanism, solvent effects and potential of mean force.水溶液中CH(3)Cl + F(-)反应的多层表示、量子力学/分子力学研究:反应机理、溶剂效应和平均力势
Phys Chem Chem Phys. 2014 Apr 28;16(16):7611-7. doi: 10.1039/c3cp55401e.
5
Solvation effects on alanine dipeptide: A MP2/cc-pVTZ//MP2/6-31G** study of (Phi, Psi) energy maps and conformers in the gas phase, ether, and water.溶剂化对丙氨酸二肽的影响:在气相、乙醚和水中对(φ,ψ)能量图和构象异构体的MP2/cc-pVTZ//MP2/6-31G**研究
J Comput Chem. 2004 Nov 15;25(14):1699-716. doi: 10.1002/jcc.20092.
6
Solvation dynamics and energetics of intramolecular hydride transfer reactions in biomass conversion.生物质转化中分子内氢化物转移反应的溶剂化动力学与能量学
Phys Chem Chem Phys. 2015 Feb 21;17(7):4961-9. doi: 10.1039/c4cp05063k.
7
Solvation Free Energies and Adsorption Energies at the Metal/Water Interface from Hybrid Quantum-Mechanical/Molecular Mechanics Simulations.从混合量子力学/分子力学模拟计算金属/水界面的溶剂化自由能和吸附能。
J Chem Theory Comput. 2020 Oct 13;16(10):6539-6549. doi: 10.1021/acs.jctc.0c00632. Epub 2020 Sep 30.
8
Converting fructose to 5-hydroxymethylfurfural: a quantum mechanics/molecular mechanics study of the mechanism and energetics.将果糖转化为 5-羟甲基糠醛:机理和能量学的量子力学/分子力学研究。
Carbohydr Res. 2011 Apr 1;346(5):664-72. doi: 10.1016/j.carres.2011.01.029. Epub 2011 Feb 4.
9
Hybrid quantum mechanical and molecular mechanics study of the S(N)2 Reaction of CCl4 + OH- in aqueous solution: the potential of mean force, reaction energetics, and rate constants.在水溶液中 CCl4 + OH- 的 S(N)2 反应的混合量子力学和分子力学研究:平均力势、反应热力学和速率常数。
J Phys Chem A. 2012 Mar 8;116(9):2371-6. doi: 10.1021/jp3005986. Epub 2012 Feb 29.
10
Solvent effects and potential of mean force: a multilayered-representation quantum mechanical/molecular mechanics study of the CH3Br + CN- reaction in aqueous solution.溶剂效应与平均力势:水溶液中CH3Br + CN-反应的多层表示量子力学/分子力学研究
Phys Chem Chem Phys. 2014 Oct 7;16(37):19993-20000. doi: 10.1039/c4cp02635g.

引用本文的文献

1
Estimating Free-Energy Surfaces and Their Convergence from Multiple, Independent Static and History-Dependent Biased Molecular-Dynamics Simulations with Mean Force Integration.通过平均力积分,从多个独立的静态和历史依赖的有偏分子动力学模拟中估计自由能表面及其收敛性。
J Chem Theory Comput. 2024 Jul 9;20(13):5418-5427. doi: 10.1021/acs.jctc.4c00091. Epub 2024 Jun 24.

本文引用的文献

1
Estimating Free-Energy Surfaces and Their Convergence from Multiple, Independent Static and History-Dependent Biased Molecular-Dynamics Simulations with Mean Force Integration.通过平均力积分,从多个独立的静态和历史依赖的有偏分子动力学模拟中估计自由能表面及其收敛性。
J Chem Theory Comput. 2024 Jul 9;20(13):5418-5427. doi: 10.1021/acs.jctc.4c00091. Epub 2024 Jun 24.
2
Kinetics from Metadynamics: Principles, Applications, and Outlook.元动力学的动力学:原理、应用与展望
J Chem Theory Comput. 2023 Sep 12;19(17):5649-5670. doi: 10.1021/acs.jctc.3c00660. Epub 2023 Aug 16.
3
Entropy and Energy Profiles of Chemical Reactions.
化学反应的熵与能量分布图
J Chem Theory Comput. 2023 Aug 22;19(16):5369-5379. doi: 10.1021/acs.jctc.3c00448. Epub 2023 Aug 3.
4
Towards a lumped approach for solid plastic waste gasification: Polyethylene and polypropylene pyrolysis.迈向固体塑料热解的集总方法:聚乙烯和聚丙烯热解。
Waste Manag. 2023 Feb 1;156:107-117. doi: 10.1016/j.wasman.2022.11.028. Epub 2022 Nov 30.
5
Free energy barriers from biased molecular dynamics simulations.从有偏分子动力学模拟中得出的自由能势垒。
J Chem Phys. 2020 Sep 21;153(11):114118. doi: 10.1063/5.0020240.
6
Time-independent free energies from metadynamics via mean force integration.基于平均力积分的无时间依赖自由能的元动力学方法。
J Chem Phys. 2019 Oct 28;151(16):164115. doi: 10.1063/1.5123498.
7
Building maps in collective variable space.在协变量空间中构建图谱。
J Chem Phys. 2018 Sep 14;149(10):104104. doi: 10.1063/1.5027528.
8
CO packing polymorphism under pressure: Mechanism and thermodynamics of the I-III polymorphic transition.高压下共晶包晶多态性:I-III 多晶型转变的机制和热力学。
J Chem Phys. 2017 Sep 21;147(11):114502. doi: 10.1063/1.4993701.
9
A Robust and Accurate Tight-Binding Quantum Chemical Method for Structures, Vibrational Frequencies, and Noncovalent Interactions of Large Molecular Systems Parametrized for All spd-Block Elements (Z = 1-86).一种用于所有 spd 区元素(Z=1-86)的大体系结构、振动频率和非共价相互作用的强韧且精确的紧束缚量子化学方法。
J Chem Theory Comput. 2017 May 9;13(5):1989-2009. doi: 10.1021/acs.jctc.7b00118. Epub 2017 Apr 24.
10
An Efficient Linear-Scaling Electrostatic Coupling for Treating Periodic Boundary Conditions in QM/MM Simulations.一种用于量子力学/分子力学(QM/MM)模拟中处理周期性边界条件的高效线性标度静电耦合方法。
J Chem Theory Comput. 2006 Sep;2(5):1370-8. doi: 10.1021/ct6001169.