Department of Hematology, Shandong Provincial Hospital, Shandong University, Jinan, Shandong, China.
Department of Hematology, Shandong Provincial Hospital, Affiliated to Shandong First Medical University, Jinan, Shandong, China.
Clin Transl Med. 2024 Jul;14(7):e1747. doi: 10.1002/ctm2.1747.
BACKGROUND: Accumulating studies suggested that posttranscriptional modifications exert a vital role in the tumorigenesis of diffuse large B-cell lymphoma (DLBCL). N4-acetylcytidine (ac4C) modification, catalyzed by the N-acetyltransferase 10 (NAT10), was a novel type of chemical modification that improves translation efficiency and mRNA stability. METHODS: GEO databases and clinical samples were used to explore the expression and clinical value of NAT10 in DLBCL. CRISPER/Cas9-mediated knockout of NAT10 was performed to determine the biological functions of NAT10 in DLBCL. RNA sequencing, acetylated RNA immunoprecipitation sequencing (acRIP-seq), LC-MS/MS, RNA immunoprecipitation (RIP)-qPCR and RNA stability assays were performed to explore the mechanism by which NAT10 contributed to DLBCL progression. RESULTS: Here, we demonstrated that NAT10-mediated ac4C modification regulated the occurrence and progression of DLBCL. Dysregulated N-acetyltransferases expression was found in DLBCL samples. High expression of NAT10 was associated with poor prognosis of DLBCL patients. Deletion of NAT10 expression inhibited cell proliferation and induced G0/G1 phase arrest. Furthermore, knockout of NAT10 increased the sensitivity of DLBCL cells to ibrutinib. AcRIP-seq identified solute carrier family 30 member 9 (SLC30A9) as a downstream target of NAT10 in DLBCL. NAT10 regulated the mRNA stability of SLC30A9 in an ac4C-dependent manner. Genetic silencing of SLC30A9 suppressed DLBCL cell growth via regulating the activation of AMP-activated protein kinase (AMPK) pathway. CONCLUSION: Collectively, these findings highlighted the essential role of ac4C RNA modification mediated by NAT10 in DLBCL, and provided insights into novel epigenetic-based therapeutic strategies.
背景:越来越多的研究表明,转录后修饰在弥漫性大 B 细胞淋巴瘤 (DLBCL) 的发生发展中起着至关重要的作用。N4-乙酰胞嘧啶 (ac4C) 修饰由 N-乙酰转移酶 10 (NAT10) 催化,是一种新型的化学修饰,可提高翻译效率和 mRNA 稳定性。
方法:使用 GEO 数据库和临床样本探讨 NAT10 在 DLBCL 中的表达和临床价值。通过 CRISPER/Cas9 介导的 NAT10 敲除来确定 NAT10 在 DLBCL 中的生物学功能。进行 RNA 测序、乙酰化 RNA 免疫沉淀测序 (acRIP-seq)、LC-MS/MS、RNA 免疫沉淀 (RIP)-qPCR 和 RNA 稳定性测定,以探讨 NAT10 促进 DLBCL 进展的机制。
结果:本研究表明,NAT10 介导的 ac4C 修饰调控了 DLBCL 的发生和发展。在 DLBCL 样本中发现调节 N-乙酰转移酶表达的失调。NAT10 的高表达与 DLBCL 患者的不良预后相关。NAT10 表达缺失抑制细胞增殖并诱导 G0/G1 期阻滞。此外,敲除 NAT10 增加了 DLBCL 细胞对伊布替尼的敏感性。acRIP-seq 鉴定溶质载体家族 30 成员 9 (SLC30A9) 为 NAT10 在 DLBCL 中的下游靶点。NAT10 以 ac4C 依赖的方式调节 SLC30A9 的 mRNA 稳定性。SLC30A9 的基因沉默通过调节 AMP 激活的蛋白激酶 (AMPK) 通路抑制 DLBCL 细胞生长。
结论:总之,这些发现强调了 NAT10 介导的 ac4C RNA 修饰在 DLBCL 中的重要作用,并为基于表观遗传的新型治疗策略提供了思路。
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