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解析游动杆菌 AK171 的基因组秘密:从海芒果中分离出的一种具有促植物生长功能的细菌。

Unraveling the genomic secrets of Tritonibacter mobilis AK171: a plant growth-promoting bacterium isolated from Avicennia marina.

机构信息

DARWIN21, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.

Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia.

出版信息

BMC Genomics. 2024 Jul 5;25(1):672. doi: 10.1186/s12864-024-10555-0.

Abstract

The scarcity of freshwater resources resulting in a significant yield loss presents a pressing challenge in agriculture. To address this issue, utilizing abundantly available saline water could offer a smart solution. In this study, we demonstrate that the genome sequence rhizosphere bacterium Tritonibacter mobilis AK171, a halophilic marine bacterium recognized for its ability to thrive in saline and waterlogged environments, isolated from mangroves, has the remarkable ability to enable plant growth using saline irrigation. AK171 is characterized as rod-shaped cells, displays agile movement in free-living conditions, and adopts a rosette arrangement in static media. Moreover, The qualitative evaluation of PGP traits showed that AK171 could produce siderophores and IAA but could not solubilize phosphate nor produce hydrolytic enzymes it exhibits a remarkable tolerance to high temperatures and salinity. In this study, we conducted a comprehensive genome sequence analysis of T. mobilis AK171 to unravel the genetic mechanisms underlying its plant growth-promoting abilities in such challenging conditions. Our analysis revealed diverse genes and pathways involved in the bacterium's adaptation to salinity and waterlogging stress. Notably, T. mobilis AK171 exhibited a high level of tolerance to salinity and waterlogging through the activation of stress-responsive genes and the production of specific enzymes and metabolites. Additionally, we identified genes associated with biofilm formation, indicating its potential role in establishing symbiotic relationships with host plants. Furthermore, our analysis unveiled the presence of genes responsible for synthesizing antimicrobial compounds, including tropodithietic acid (TDA), which can effectively control phytopathogens. This genomic insight into T. mobilis AK171 provides valuable information for understanding the molecular basis of plant-microbial interactions in saline and waterlogged environments. It offers potential applications for sustainable agriculture in challenging conditions.

摘要

淡水资源短缺导致农作物产量显著下降,这是农业面临的紧迫挑战。为了解决这个问题,利用丰富的咸水资源可能是一个明智的解决方案。在这项研究中,我们证明了从红树林中分离出的嗜盐海洋细菌 Tritonibacter mobilis AK171 的基因组序列,具有在咸水环境和水淹环境中茁壮成长的能力,它具有利用咸水灌溉促进植物生长的非凡能力。AK171 的特点是杆状细胞,在自由生活条件下表现出敏捷的运动能力,在静态培养基中呈玫瑰花结排列。此外,PGP 特性的定性评价表明,AK171 可以产生铁载体和 IAA,但不能溶解磷酸盐,也不能产生水解酶,它对高温和高盐度表现出显著的耐受性。在这项研究中,我们对 T. mobilis AK171 进行了全面的基因组序列分析,以揭示其在这种挑战性条件下促进植物生长的遗传机制。我们的分析揭示了参与细菌适应盐度和水淹胁迫的多种基因和途径。值得注意的是,T. mobilis AK171 通过激活应激响应基因和产生特定的酶和代谢物,表现出对盐度和水淹的高度耐受性。此外,我们还鉴定了与生物膜形成相关的基因,表明其在与宿主植物建立共生关系方面的潜在作用。此外,我们的分析揭示了合成抗菌化合物的基因的存在,包括 tropodithietic 酸(TDA),它可以有效地控制植物病原菌。对 T. mobilis AK171 的基因组分析为理解盐度和水淹环境中植物-微生物相互作用的分子基础提供了有价值的信息。它为在挑战性条件下实现可持续农业提供了潜在的应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eec8/11225332/d7d6167ca599/12864_2024_10555_Fig1_HTML.jpg

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