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从红海沿岸生长的海桑根际中分离到的促生菌,节杆菌属 AK164 的全基因组序列分析。

Complete genome sequence analysis of plant growth-promoting bacterium, Isoptericola sp. AK164 isolated from the rhizosphere of Avicennia marina growing at the Red Sea coast.

机构信息

DARWIN21, Center for Desert Agriculture (CDA), Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), 23955-6900, Thuwal, Saudi Arabia.

出版信息

Arch Microbiol. 2023 Aug 14;205(9):307. doi: 10.1007/s00203-023-03654-1.

Abstract

Isoptericola sp. AK164 is a Gram-positive, aerobic bacterial genus from the family Promicromonosporaceae, isolated from the root rhizosphere of Avicennia marina. AK164 significantly enhanced the growth of the Arabidopsis thaliana plant under normal and saline conditions. These bacteria can produce ACC deaminase and several enzymes playing a role in carbohydrate hydrolyses, such as cellulose, hemicellulose, and chitin degradation, which may contribute to plant growth, salt tolerance, and stress elevation. The genome sequence AK164 has a single circular chromosome of approximately 3.57 Mbp with a GC content of 73.53%. A whole genome sequence comparison of AK164 with type strains from the same genus, using digital DNA-DNA hybridization and average nucleotide identity calculations, revealed that AK164 might potentially belong to a new species of Isoptericola. Genome data and biochemical analyses indicate that AK164 could be a potential biostimulant for improving agriculture in submerged saline land.

摘要

短稳杆菌 AK164 是一种革兰氏阳性需氧细菌,属于普罗米克罗莫司孢菌科,从红树林的根际土壤中分离得到。AK164 可显著促进拟南芥在正常和盐胁迫条件下的生长。这些细菌可以产生 ACC 脱氨酶和几种参与碳水化合物水解的酶,如纤维素、半纤维素和几丁质降解,这可能有助于植物生长、耐盐和提高胁迫抗性。AK164 的基因组序列为约 3.57 Mbp 的单链环状染色体,GC 含量为 73.53%。对 AK164 与同属的模式菌株进行全基因组序列比较,采用数字 DNA-DNA 杂交和平均核苷酸同一性计算,表明 AK164 可能属于短稳杆菌属的一个新种。基因组数据和生化分析表明,AK164 可能是一种潜在的生物刺激剂,可用于改善盐渍潜水土地的农业。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5de5/10425560/670c2064d662/203_2023_3654_Fig1_HTML.jpg

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