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通过DNA条形码界定青藏高原象鼻虫的物种、揭示隐秘多样性及种群分化

Delimiting species, revealing cryptic diversity, and population divergence in Qinghai-Tibet Plateau weevils through DNA barcoding.

作者信息

Ren Jinliang, Ren Li, Zhang Runzhi

机构信息

Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology Chinese Academy of Sciences Beijing China.

College of Life Science University of Chinese Academy of Sciences Beijing China.

出版信息

Ecol Evol. 2024 Jul 8;14(7):e11592. doi: 10.1002/ece3.11592. eCollection 2024 Jul.

Abstract

The group represents one of the most diverse taxonomic group of weevils in the Qinghai-Tibet Plateau and its adjacent areas. Despite the potential of hidden diversity, relatively few comprehensive studies have been conducted on species diversity in this taxonomic group. In this study, we performed DNA barcoding analysis for species of the group using a comprehensive DNA barcode dataset that included 476 sequences representing 54 morphospecies. Within the dataset, our laboratory contributed 474 sequences, and 390 sequences were newly generated for this study. The average Kimura 2-parameter distances among morphospecies and genera were 0.76% and 19.15%, respectively. In 94.4% of the species, the minimum interspecific distances exceeded the maximum intraspecific distances, indicating the presence of barcode gaps in most species of group. The application of Automatic Barcode Gap Discovery, Assemble Species by Automatic Partitioning, Barcode Index Number, Bayesian Poisson tree processes, jMOTU, and Neighbor-joining tree methods revealed 45, 45, 63, 54, and 55 distinct clusters representing single species, respectively. Additionally, a total of four morphospecies, , , , and sp.9RL, were found to be assigned to multiple subclade each, indicating the geographical divergences and the presence of cryptic diversity. Our findings of this study demonstrate that Qinghai-Tibet Plateau exhibits a higher species diversity of the group, and it is imperative to investigate cryptic species within certain morphospecies using integrative taxonomic approaches in future studies. Moreover, the construction of a DNA barcode reference library presented herein establishes a robust foundational dataset to support forthcoming research on weevil taxonomy, phylogenetics, ecology, and evolution.

摘要

该类群是青藏高原及其邻近地区象鼻虫中分类最为多样的类群之一。尽管可能存在隐藏的多样性,但针对这一分类类群的物种多样性进行的综合研究相对较少。在本研究中,我们使用一个包含476个序列、代表54个形态物种的综合DNA条形码数据集,对该类群的物种进行了DNA条形码分析。在数据集中,我们实验室贡献了474个序列,本研究新生成了390个序列。形态物种和属之间的平均Kimura双参数距离分别为0.76%和19.15%。在94.4%的物种中,种间最小距离超过了种内最大距离,表明该类群的大多数物种存在条形码间隙。应用自动条形码间隙发现、自动划分组装物种、条形码索引号、贝叶斯泊松树过程、jMOTU和邻接树方法分别揭示了代表单一物种的45、45、63、54和55个不同聚类。此外,总共发现四个形态物种,即[物种名称1]、[物种名称2]、[物种名称3]和[物种名称4] sp.9RL,各自被分配到多个亚分支,表明存在地理分歧和隐存多样性。我们的研究结果表明,青藏高原该类群表现出更高的物种多样性,在未来研究中使用综合分类方法调查某些形态物种内的隐存物种势在必行。此外,本文构建的DNA条形码参考库建立了一个强大的基础数据集,以支持即将开展的关于象鼻虫分类学、系统发育学、生态学和进化的研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d215/11229427/71aa72954c0d/ECE3-14-e11592-g004.jpg

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