基于结构的登革病毒非结构蛋白 4B(NS4B)同源建模及其三萜类化合物的分子对接研究。

In silico homology modeling of dengue virus non-structural 4B (NS4B) protein and its molecular docking studies using triterpenoids.

机构信息

Department of Chemistry, Bacha Khan University, Charsadda, Khyber Pakhtunkhwa, Pakistan.

Department of Chemistry, Kohat University of Science and Technology, Kohat, 26000, Khyber Pakhtunkhwa, Pakistan.

出版信息

BMC Infect Dis. 2024 Jul 10;24(1):688. doi: 10.1186/s12879-024-09578-5.

Abstract

BACKGROUND

Dengue fever has become a significant worldwide health concern, because of its high morbidity rate and the potential for an increase in mortality rates due to lack of adequate treatment. There is an immediate need for the development of effective medication for dengue fever.

METHODS

Homology modeling of dengue virus (DENV) non-structural 4B (NS4B) protein was performed by SWISS-MODEL to predict the 3D structure of the protein. Structure validation was conducted using PROSA, PROCHECK, Ramachandran plot, and VERIFY-3D. MOE software was used to find out the in-Silico inhibitory potential of the five triterpenoids against the DENV-NS4B protein.

RESULTS

The SWISS-MODEL was employed to predict the three-dimensional protein structure of the NS4B protein. Through molecular docking, it was found that the chosen triterpenoid NS4B protein had a high binding affinity interaction. It was observed that the NS4B protein binding energy for 15-oxoursolic acid, betulinic acid, ursolic acid, lupeol, and 3-o-acetylursolic acid were - 7.18, - 7.02, - 5.71, - 6.67 and - 8.00 kcal/mol, respectively.

CONCLUSIONS

NS4B protein could be a promising target which showed good interaction with tested triterpenoids which can be developed as a potential antiviral drug for controlling dengue virus pathogenesis by inhibiting viral replication. However, further investigations are necessary to validate and confirm their efficacy.

摘要

背景

登革热已成为全球严重的健康问题,因为其发病率高,且由于缺乏足够的治疗,死亡率有上升的潜在风险。因此,急需开发有效的登革热治疗药物。

方法

使用 SWISS-MODEL 对登革热病毒(DENV)非结构蛋白 4B(NS4B)进行同源建模,以预测该蛋白的 3D 结构。使用 PROSA、PROCHECK、Ramachandran 图和 VERIFY-3D 对结构进行验证。使用 MOE 软件找出 5 种三萜类化合物对 DENV-NS4B 蛋白的计算机模拟抑制潜力。

结果

使用 SWISS-MODEL 预测 NS4B 蛋白的三维结构。通过分子对接,发现所选三萜类化合物与 NS4B 蛋白具有高结合亲和力。观察到 15-氧乌苏酸、齐墩果酸、熊果酸、羽扇豆醇和 3-o-乙酰基熊果酸与 NS4B 蛋白的结合能分别为-7.18、-7.02、-5.71、-6.67 和-8.00 kcal/mol。

结论

NS4B 蛋白可能是一个有前途的靶点,与测试的三萜类化合物具有良好的相互作用,可以开发为一种潜在的抗病毒药物,通过抑制病毒复制来控制登革热病毒的发病机制。然而,需要进一步的研究来验证和确认它们的疗效。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff37/11238477/318523759439/12879_2024_9578_Fig1_HTML.jpg

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