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在水中有利于亚胺而非水合物形成的关键结构特征:以磷酸吡哆醛为例。

Key structural features to favour imines over hydrates in water: pyridoxal phosphate as a muse.

作者信息

Esteve Ferran, Rieu Tanguy, Lehn Jean-Marie

机构信息

Laboratoire de Chimie Supramoléculaire, Institut de Science et d'Ingénierie Supramoléculaires (ISIS), Université de Strasbourg 8 allée Gaspard Monge Strasbourg 67000 France

出版信息

Chem Sci. 2024 Jun 11;15(27):10408-10415. doi: 10.1039/d4sc02206h. eCollection 2024 Jul 10.

DOI:10.1039/d4sc02206h
PMID:38994419
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11234862/
Abstract

Imination reactions in water represent a challenge not only because of the high propensity of imines to be hydrolysed but also as a result of the competing hydrate formation through HO addition to the aldehyde. In the present work we report a successful approach that allows for favouring imitation reactions while silencing hydrate formation. Such remarkable reactivity and selectivity can be attained by fine-tuning the electronic and steric structural features of the -substituents of the carbonyl groups. It resulted from studying the structure-reactivity relationships in a series of condensation reactions between different amines and aldehydes, comparing the results to the ones obtained in the presence of the biologically-relevant pyridoxal phosphate (PLP). The key role of negatively-charged and sterically-crowding units (, sulfonate groups) in disfavouring hydrate formation was corroborated by DFT and steric-hindrance calculations. Furthermore, the best-performing aldehyde leads to higher imine yields, selectivity and stability than those of PLP itself, allowing for the inhibition of a PLP-dependent enzyme (transaminase) through dynamic aldimine exchange. These results will increase the applicability of imine-based dynamic covalent chemistry (DCvC) under physiological conditions and will pave the way for the design of new carbonyl derivatives that might be used in the dynamic modification of biomolecules.

摘要

水中的亚胺化反应是一项挑战,这不仅是因为亚胺极易水解,还因为醛通过与水加成形成水合物的竞争反应。在本工作中,我们报道了一种成功的方法,该方法能够促进亚胺化反应,同时抑制水合物的形成。通过微调羰基α-取代基的电子和空间结构特征,可以实现如此显著的反应活性和选择性。这是通过研究一系列不同胺与醛之间缩合反应的结构-反应关系,并将结果与在生物相关的磷酸吡哆醛(PLP)存在下获得的结果进行比较得出的。密度泛函理论(DFT)和空间位阻计算证实了带负电荷和空间拥挤的基团(如磺酸基团)在抑制水合物形成中的关键作用。此外,性能最佳的醛比PLP本身能产生更高的亚胺产率、选择性和稳定性,通过动态醛亚胺交换可抑制PLP依赖的酶(转氨酶)。这些结果将提高基于亚胺的动态共价化学(DCvC)在生理条件下的适用性,并为设计可用于生物分子动态修饰的新型羰基衍生物铺平道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11234862/8a86c4763b36/d4sc02206h-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11234862/e82d687b5367/d4sc02206h-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11234862/51e789ddfa3e/d4sc02206h-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11234862/b3c22adcbfa3/d4sc02206h-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11234862/151dec022d17/d4sc02206h-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11234862/8a86c4763b36/d4sc02206h-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11234862/e82d687b5367/d4sc02206h-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11234862/51e789ddfa3e/d4sc02206h-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11234862/b3c22adcbfa3/d4sc02206h-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11234862/151dec022d17/d4sc02206h-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11234862/8a86c4763b36/d4sc02206h-f5.jpg

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本文引用的文献

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2
Dynamic covalent self-assembly and self-sorting processes in the formation of imine-based macrocycles and macrobicyclic cages.基于亚胺的大环和大二环笼状化合物形成过程中的动态共价自组装和自分类过程。
Chem Sci. 2023 Jun 2;14(24):6631-6642. doi: 10.1039/d3sc01174g. eCollection 2023 Jun 21.
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Light-Fueled Transformations of a Dynamic Cage-Based Molecular System.
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Angew Chem Int Ed Engl. 2023 Feb 20;62(9):e202214495. doi: 10.1002/anie.202214495. Epub 2023 Jan 19.
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A trefoil knot self-templated through imination in water.水相中的亚氨酸三叶草型自模板环化。
Nat Commun. 2022 Jun 21;13(1):3557. doi: 10.1038/s41467-022-31289-1.
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Protein inspired chemically orthogonal imines for linchpin directed precise and modular labeling of lysine in proteins.受蛋白质启发的化学正交亚胺用于连接子导向的蛋白质赖氨酸精确定量和模块化标记。
Chem Commun (Camb). 2022 Feb 3;58(11):1768-1771. doi: 10.1039/d1cc05559c.
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Nonequilibrium Catalytic Supramolecular Assemblies of Melamine- and Imidazole-Based Dynamic Building Blocks.基于三聚氰胺和咪唑的动态构建单元的非平衡催化超分子组装体
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