State Key Laboratory of Biotherapy, Collaborative Innovation Center of Biotherapy and Cancer Center, West China Hospital of Sichuan University, Sichuan, Chengdu 610041, China; Department of Pharmacy, West China Hospital of Sichuan University, Chengdu 610041, China.
Key Laboratory of Bioactive Peptides of Yunnan Province/Key Laboratory of Animal Models and Human Disease Mechanisms of Chinese Academy of Sciences, KIZ-CUHK Joint Laboratory of Bioresources and Molecular Research in Common Diseases, Center for Biosafety Mega-Science, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, China.
Bioorg Med Chem Lett. 2024 Oct 1;111:129880. doi: 10.1016/j.bmcl.2024.129880. Epub 2024 Jul 10.
Viral infectivity factor (Vif) has been recognized as a new therapeutic target for human immunodeficiency virus-1 (HIV-1) infected patients. In our previous work, we have synthesized a novel class of Vif inhibitors with 2-amino-N-(5-hydroxy-2-methoxyphenyl)-6-((4-nitrophenyl)thio)benzamide scaffold, which show obvious activity in HIV-1 infected cells and are also effective against drug-resistant strains. Proteolytic targeting chimera (PROTAC) utilizes the ubiquitin-proteasome system to degrade target proteins, which is well established in the field of cancer, but the antiviral PROTAC molecules are rarely reported. In order to explore the effectiveness of PROTAC in the antiviral area, we designed and synthesized a series of degrader of HIV-1 Vif based on 2-amino-N-(5-hydroxy-2-methoxyphenyl)-6-((4-nitrophenyl)thio)benzamide scaffold. Among them, L15 can degrade Vif protein obviously in a dose-dependent manner and shows certain antivirus activity. Meanwhile, molecular dynamics simulation indicated that the ternary complex formed by L15, Vif, and E3 ligase adopted a reasonable binding mode and maintained a stable interaction. This provided a molecular basis and prerequisite for the selective degradation of the Vif protein by L15. This study reports the HIV-1 Vif PROTAC for the first time and represents the proof-of-concept of PROTACs-based antiviral drug discovery in the field of HIV/ acquired immune deficiency syndrome (AIDS).
病毒感染性因子(Vif)已被认为是人类免疫缺陷病毒 1(HIV-1)感染患者的新治疗靶点。在我们之前的工作中,我们合成了一类新型的 Vif 抑制剂,具有 2-氨基-N-(5-羟基-2-甲氧基苯基)-6-((4-硝基苯基)硫)苯甲酰胺骨架,在 HIV-1 感染细胞中表现出明显的活性,并且对耐药株也有效。蛋白水解靶向嵌合体(PROTAC)利用泛素-蛋白酶体系统降解靶蛋白,这在癌症领域已经得到很好的证实,但抗病毒 PROTAC 分子很少有报道。为了探索 PROTAC 在抗病毒领域的有效性,我们基于 2-氨基-N-(5-羟基-2-甲氧基苯基)-6-((4-硝基苯基)硫)苯甲酰胺骨架设计并合成了一系列 HIV-1 Vif 的降解剂。其中,L15 可以明显地、剂量依赖地降解 Vif 蛋白,并表现出一定的抗病毒活性。同时,分子动力学模拟表明,L15、Vif 和 E3 连接酶形成的三元复合物采用了合理的结合模式,并保持了稳定的相互作用。这为 L15 对 Vif 蛋白的选择性降解提供了分子基础和前提。本研究首次报道了 HIV-1 Vif 的 PROTAC,代表了 PROTAC 基于艾滋病领域抗病毒药物发现的概念验证。