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中与高温相关基因的全基因组鉴定与表征

Genome-Wide Identification and Characterization of Genes Related to High Temperature in .

作者信息

Wang Cheng, Wang Xiaojing, Zhou Ping, Li Changchun

机构信息

Hubei Key Laboratory of Quality Control of Characteristic Fruits and Vegetables, College of Life Science and Technology, Hubei Engineering University, Xiaogan 432000, China.

Hubei Province Research Center of Engineering Technology for Utilization of Botanical Functional Ingredients, Xiaogan 432000, China.

出版信息

Plants (Basel). 2024 Jul 7;13(13):1878. doi: 10.3390/plants13131878.

Abstract

Heat shock proteins (HSPs) are molecular chaperones that play essential roles in plant development and in response to various environmental stresses. Understanding genes is of great importance since is severely affected by heat stress. In the present study, a total of 76 genes were identified in the genome, which were divided into five subfamilies based on molecular weight and domain composition. Analyses of the chromosome distribution, gene structure, and conserved motif of the family genes were conducted using bioinformatics analysis methods. Gene duplication analysis showed that 15 and 8 genes were obtained and retained from the WGD/segmental duplication and tandem duplication, respectively. -element analysis revealed the importance of genes in plant adaptations to the environment. Moreover, the expression patterns of family genes were investigated in treated with high temperature based on our RNA-seq data, which were further verified by qRT-PCR. Further analysis revealed that nine candidate genes, including six subfamily genes (, , , , , and ) and three subfamily genes (, , and ), might be involved in enhancing the heat stress tolerance. The subcellular localization of two candidate genes ( and ) showed that two candidate RdHSPs were expressed and function in the chloroplast and nucleus, respectively. These results provide a basis for the functional characterization of genes and investigations on the molecular mechanisms of heat stress response in .

摘要

热休克蛋白(HSPs)是分子伴侣,在植物发育以及应对各种环境胁迫中发挥着重要作用。了解这些基因非常重要,因为植物发育会受到热胁迫的严重影响。在本研究中,在[植物名称]基因组中共鉴定出76个HSP基因,根据分子量和结构域组成将它们分为五个亚家族。使用生物信息学分析方法对该家族基因的染色体分布、基因结构和保守基序进行了分析。基因复制分析表明,分别从全基因组复制/片段重复和串联重复中获得并保留了15个和8个HSP基因。顺式作用元件分析揭示了HSP基因在植物适应环境中的重要性。此外,基于我们的RNA测序数据,研究了高温处理下[植物名称]中HSP家族基因的表达模式,并通过qRT-PCR进一步验证。进一步分析表明,九个候选基因,包括六个HSP亚家族基因([基因名称1]、[基因名称2]、[基因名称3]、[基因名称4]、[基因名称5]和[基因名称6])和三个其他亚家族基因([基因名称7]、[基因名称8]和[基因名称9]),可能参与增强热胁迫耐受性。两个候选HSP基因([基因名称10]和[基因名称11])的亚细胞定位表明,两个候选RdHSP分别在叶绿体和细胞核中表达并发挥功能。这些结果为HSP基因的功能表征以及[植物名称]热胁迫响应分子机制的研究提供了依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1708/11244423/6e4276463464/plants-13-01878-g001.jpg

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