Ma Sirui, Guo Yixian, Zhang Tianyi, Liu Di, Wang Linna, Hu Ruiwen, Zhou Demian, Zhou Ying, Chen Qinfang, Yu Lujun
State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Stress Biology, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China.
Plants (Basel). 2024 Sep 15;13(18):2586. doi: 10.3390/plants13182586.
The Multidrug and Toxic Compound Extrusion (MATE) proteins serve as pivotal transporters responsible for the extrusion of metabolites, thereby playing a significant role in both plant development and the detoxification of toxins. The gene family within the , which is an important model organism of the Poaceae family, remains largely unexplored. Here, a comprehensive identification and analysis of genes that complement were conducted. The genes were systematically categorized into five distinct groups, predicated on an assessment of their phylogenetic affinities and protein structure. Furthermore, our investigation revealed that dispersed duplication has significantly contributed to the expansion of the genes, with tandem and segmental duplications showing important roles, suggesting that the genes in Poaceae species have embarked on divergent evolutionary trajectories. Examination of ω values demonstrated that genes underwent purifying selection throughout the evolutionary process. Furthermore, collinearity analysis has confirmed a high conservation of genes between and rice. The cis-regulatory elements analysis within promoters, coupled with expression patterns, suggests that play important roles during plant development and in response to phytohormones. Collectively, the findings presented establish a foundational basis for the subsequent detailed characterization of the gene family members in .
多药与有毒化合物外排(MATE)蛋白作为关键转运蛋白,负责代谢物的外排,因此在植物发育和毒素解毒过程中均发挥着重要作用。在禾本科重要模式生物水稻中,该基因家族在很大程度上仍未被探索。在此,我们对水稻中补充的MATE基因进行了全面鉴定与分析。基于系统发育亲缘关系和蛋白质结构评估,这些MATE基因被系统地分为五个不同的组。此外,我们的研究表明,分散重复对MATE基因的扩增有显著贡献,串联重复和片段重复也发挥了重要作用,这表明禾本科物种中的MATE基因已走上不同的进化轨迹。对ω值的检测表明,MATE基因在整个进化过程中经历了纯化选择。此外,共线性分析证实了水稻和水稻之间MATE基因的高度保守性。水稻启动子内的顺式调控元件分析以及表达模式表明,MATE在植物发育过程中以及对植物激素的响应中发挥重要作用。总体而言,所呈现的研究结果为后续详细表征水稻中的MATE基因家族成员奠定了基础。