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CO 结合到 P450 BM3 F393 突变体对血红素辅基中电子密度分布的影响。

Effect of CO binding to P450 BM3 F393 mutants on electron density distribution in the heme cofactor.

机构信息

Department of Chemistry and Biochemistry, Montclair State University, 1 Normal Avenue, Montclair, NJ 07043, USA.

School of Life Sciences, Tsinghua University, Beijing, China.

出版信息

J Inorg Biochem. 2024 Oct;259:112660. doi: 10.1016/j.jinorgbio.2024.112660. Epub 2024 Jul 5.

Abstract

Resonance Raman spectroscopy has been performed on a set of cytochrome P450 BM3 heme domains in which mutation of the highly conserved Phe393 induces significant variation in heme iron reduction potential. In previous work [Chen, Z., Ost, T.W.B., and Schelvis, J.P.M. (2004) Biochemistry 43, 1798-1808], a correlation between heme vinyl conformation and the heme iron reduction potential indicated a steric control by the protein over the distribution of electron density in the reduced heme cofactor. The current study aims to monitor changes in electron density on the ferrous heme cofactor following CO binding. In addition, ferric-NO complexes have been studied to investigate potential changes to the proximal Cys400 thiolate. We find that binding of CO to the ferrous heme domains results in a reorientation of the vinyl groups to a largely out-of-plane conformation, the extent of which correlates with the size of the residue at position 393. We conclude that Fe d back bonding to the CO ligand largely takes away the need for conjugation of the vinyl groups with the porphyrin ring to accommodate Fe d back bonding to the porphyrin ligand. The ferrous-CO and ferric-NO data are consistent with a small decrease in σ-electron donation from the proximal Cys400 thiolate in the F393A mutant and, to a lesser extent, the F393H mutant, potentially due to a small increase in hydrogen bonding to the proximal ligand. Phe393 seems strategically placed to preserve robust σ-electron donation to the heme iron and to fine-tune its electron density by limiting vinyl group rotation.

摘要

共振拉曼光谱已在一组细胞色素 P450 BM3 血红素域上进行,其中高度保守的 Phe393 突变诱导血红素铁还原电位发生显著变化。在以前的工作中[Chen, Z., Ost, T.W.B., and Schelvis, J.P.M. (2004) Biochemistry 43, 1798-1808],血红素乙烯基构象与血红素铁还原电位之间的相关性表明,蛋白质对还原血红素辅因子中电子密度的分布具有空间控制作用。当前的研究旨在监测 CO 结合后亚铁血红素辅因子中电子密度的变化。此外,还研究了 ferric-NO 配合物,以研究对近端 Cys400 硫醇的潜在变化。我们发现,CO 与亚铁血红素域结合导致乙烯基基团重新定向到很大程度上的非平面构象,其程度与 393 位残基的大小相关。我们得出结论,Fe d 与 CO 配体的反向键合在很大程度上消除了乙烯基基团与卟啉环共轭以适应 Fe d 与卟啉配体的反向键合的需要。亚铁-CO 和 ferric-NO 数据与 F393A 突变体中近端 Cys400 硫醇的 σ 电子供体略有减少以及 F393H 突变体的情况一致,这可能是由于与近端配体的氢键略有增加所致。Phe393 似乎处于有利位置,可以保持对血红素铁的强大 σ 电子供体,并通过限制乙烯基基团的旋转来微调其电子密度。

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