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从富铁火星模拟地苏丹地下矿中分离出革兰氏阳性、三价铁还原菌“MK1”并对其进行基因组分析。

Isolation and genomic analysis of " MK1, a Gram-positive, Fe(III)-reducing bacterium from the Soudan Underground Mine, an iron-rich Martian analog site.

机构信息

BioTechnology Institute, University of Minnesota-Twin Cities, St. Paul, Minnesota, USA.

Department of Plant and Microbial Biology, University of Minnesota-Twin Cities, St. Paul, Minnesota, USA.

出版信息

Appl Environ Microbiol. 2024 Aug 21;90(8):e0004424. doi: 10.1128/aem.00044-24. Epub 2024 Jul 15.


DOI:10.1128/aem.00044-24
PMID:39007603
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11337815/
Abstract

The Soudan Underground Mine State Park, found in the Vermilion Iron Range in northern Minnesota, provides access to a ~ 2.7 billion-year-old banded iron formation. Exploratory boreholes drilled between 1958 and 1962 on the 27th level (713 m underground) of the mine intersect calcium and iron-rich brines that have recently been subject to metagenomic analysis and microbial enrichments. Using concentrated brine samples pumped from a borehole depth of up to 55 m, a novel Gram-positive bacterium was enriched under anaerobic, acetate-oxidizing, and Fe(III) citrate-reducing conditions. The isolated bacterium, designated strain MK1, is non-motile, rod-shaped, spore-forming, anaerobic, and mesophilic, with a growth range between 24°C and 30°C. The complete circular MK1 genome was found to be 3,720,236 bp and encodes 25 putative multiheme cytochromes, including homologs to inner membrane cytochromes in the Gram-negative bacterium and cytoplasmic membrane and periplasmic cytochromes in the Gram-positive bacterium . However, MK1 does not encode homologs of the peptidoglycan (CwcA) and cell surface-associated (OcwA) multiheme cytochromes proposed to be required by to perform extracellular electron transfer. The 16S rRNA gene sequence of MK1 indicates that its closest related isolate is strain sk.kt5 (91% sequence identity), which places MK1 in a novel genus within the family and order. Within the order, only strain KKC1 has been reported to reduce Fe(III), and only can also grow in temperatures below 40°C. Thus, MK1 represents a novel species within a novel genus, for which we propose the name " strain MK1, and provides a unique opportunity to study a cytochrome-rich, mesophilic, Gram-positive, spore-forming Fe(III)-reducing bacterium.IMPORTANCEThe Soudan Underground Mine State Park gives access to understudied regions of the deep terrestrial subsurface that potentially predate the Great Oxidation Event. Studying organisms that have been relatively unperturbed by surface conditions for as long as 2.7 billion years may give us a window into ancient life before oxygen dominated the planet. Additionally, studying microbes from anoxic and iron-rich environments can help us better understand the requirements of life in analogous environments, such as on Mars. The isolation and characterization of " strain MK1 give us insights into a novel genus and species that is distinct both from its closest related isolates and from iron reducers characterized to date. " strain MK1 may also act as a model organism to study how the processes of sporulation and germination are affected by insoluble extracellular acceptors, as well as the impact of spores in the deep terrestrial biosphere.

摘要

苏德恩地下矿山州立公园位于明尼苏达州北部的弗米利恩铁矿带,可进入一个 ~27 亿年的条带状铁矿。1958 年至 1962 年,在矿山的第 27 层(地下 713 米)进行了勘探性钻孔,这些钻孔穿过了最近经过宏基因组分析和微生物富集的富含钙和铁的卤水。使用从钻孔深度达 55 米的浓缩卤水样本,在厌氧、乙酸氧化和 Fe(III)柠檬酸盐还原条件下富集了一种新型革兰氏阳性细菌。分离出的细菌命名为菌株 MK1,其特征为非运动性、杆状、孢子形成、厌氧和嗜温,生长范围在 24°C 到 30°C 之间。发现完整的 MK1 基因组为 3720236 bp,并编码了 25 种假定的多血红素细胞色素,包括革兰氏阴性菌中内膜细胞色素的同源物 和革兰氏阳性菌中的细胞质膜和周质细胞色素的同源物 。然而,MK1 不编码被提议为 进行细胞外电子转移所必需的肽聚糖(CwcA)和细胞表面相关(OcwA)多血红素细胞色素的同源物。MK1 的 16S rRNA 基因序列表明,其最接近的分离株是 菌株 sk.kt5(91%序列同一性),这将 MK1 置于 科和 目中的一个新属中。在 目中,只有 菌株 KKC1 已被报道还原 Fe(III),只有 可以在低于 40°C 的温度下生长。因此,MK1 代表了一个新属中的一个新种,我们建议将其命名为“菌株 MK1”,并为研究富含细胞色素、嗜温、革兰氏阳性、孢子形成的 Fe(III)还原菌提供了独特的机会。

重要性苏德恩地下矿山州立公园可进入研究深度陆地地下相对未被研究的区域,这些区域可能早于大氧化事件。研究在长达 27 亿年的时间里相对不受地表条件影响的生物体,可能使我们了解到地球含氧之前的古代生命。此外,研究缺氧和富铁环境中的微生物可以帮助我们更好地了解类似火星等环境中生命的要求。“菌株 MK1 的分离和表征使我们深入了解一个与最接近的分离株以及迄今为止所描述的铁还原剂都不同的新属和新种。菌株 MK1 也可能作为一种模式生物,研究不溶性细胞外受体如何影响孢子形成和发芽过程,以及孢子对深层陆地生物圈的影响。

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本文引用的文献

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Protein Sci. 2023-11

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