Suppr超能文献

植物化学物质的在线筛选以及:抗氧化活性、密度泛函理论(DFT)、分子动力学(MD)模拟、药物代谢动力学/药物毒性(ADME/T)分析和黄嘌呤氧化酶结合研究。

Phytochemical on-line screening and study of : antioxidant activity, DFT, MD simulation, ADME/T analysis, and xanthine oxidase binding.

作者信息

Chemam Yasmine, Benayache Samir, Bouzina Abdeslem, Marchioni Eric, Sekiou Omar, Bentoumi Houria, Zhao Minjie, Bouslama Zihad, Aouf Nour-Eddine, Benayache Fadila

机构信息

Unité de Recherche Valorisation des Ressources Naturelles, Molécules Bioactives et Analyses Physicochimiques et Biologiques, Université Frères Mentouri Constantine 1, Route d'Aïn El Bey 25000 Constantine Algeria

Chimie Analytique des Molécules Bioactives, Institut Pluridisciplinaire Hubert Curien (UMR 7178 CNRS/UDS) 74 route du Rhin 67400 Illkirch France.

出版信息

RSC Adv. 2024 Jul 15;14(31):22209-22228. doi: 10.1039/d4ra02540g. eCollection 2024 Jul 12.

Abstract

Seven components from the methanol extract of the aerial part of the endemic species were isolated and identified for the first time. Investigating this species and its separated components chemical make-up and radical scavenging capacity, was the main goal. Using an online HPLC-ABTS˙ test, ORAC, and TEAC assays, the free radical scavenging capacity of the ethyl acetate extract was assessed. The fractionation of these extracts by CC, TLC, and reverse-phase HPLC was guided by the collected data, which was corroborated by TEAC and ORAC assays. Molecular docking studies, DFT at the B3LYP level, and an examination of the ADME/T predictions of all compounds helped to further clarify the phytochemicals' antioxidant potential. Isolation and identification of all components were confirmed through spectroscopy, which revealed a mixture (50-50%) of -hydroxybenzoic acid 1 and methyl gallate 2, protocatechuic acid 3, astragalin 4, -tiliroside 5, -tiliroside 6, contaminated by -tiliroside and 3-oxo-α-ionol-β-d-glucopyranoside 7, as well as two new compounds for the genus (2 and 7). With a focus on compounds 1, 2, 3, and 4, the results clearly showed that the extract and the compounds tested from this species had a high antioxidant capacity. Within the xanthine oxidase enzyme's pocket, all of the components tested showed strong and stable binding. In light of these findings, the xanthine oxidase/methyl gallate 2 complex was simulated using the Desmond module of the Schrodinger suite molecular dynamics (MD) for 100 ns. Substantially stable receptor-ligand complexes were observed following 1 ns of MD simulation.

摘要

首次从该特有物种地上部分的甲醇提取物中分离并鉴定出七种成分。主要目标是研究该物种及其分离成分的化学组成和自由基清除能力。使用在线HPLC-ABTS˙测试、ORAC和TEAC分析方法,评估了乙酸乙酯提取物的自由基清除能力。通过CC、TLC和反相HPLC对这些提取物进行分馏,以收集到的数据为指导,并通过TEAC和ORAC分析进行了验证。分子对接研究、B3LYP水平的DFT以及对所有化合物的ADME/T预测的检查,有助于进一步阐明植物化学物质的抗氧化潜力。通过光谱法确认了所有成分的分离和鉴定,结果显示为对羟基苯甲酸1和没食子酸甲酯2、原儿茶酸3、黄芪苷4、α-椴木苷5、β-椴木苷6(被α-椴木苷和3-氧代-α-紫罗兰醇-β-D-吡喃葡萄糖苷7污染)的混合物(50-50%),以及该属的两种新化合物(2和7)。以化合物1、2、3和4为重点,结果清楚地表明该物种的提取物和测试的化合物具有较高的抗氧化能力。在黄嘌呤氧化酶的酶袋内,所有测试成分都显示出强而稳定的结合。根据这些发现,使用Schrodinger套件分子动力学(MD)的Desmond模块对黄嘌呤氧化酶/没食子酸甲酯2复合物进行了100 ns的模拟。在1 ns的MD模拟后观察到了基本稳定的受体-配体复合物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/de66/11247359/0b3e50e78c70/d4ra02540g-f1.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验