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从患有膀胱过度活动症症状的女性导尿尿液样本中分离出的两株菌株的基因组草图。

Draft genomes of two strains isolated from catheterized urine samples from females experiencing overactive bladder symptoms.

作者信息

Appleberry Helen, Patel Richa, Singh Kanishka, Wolfe Alan J, Putonti Catherine, Kula Alex

机构信息

Department of Biology, Loyola University Chicago , Chicago, Illinois, USA.

Bioinformatics Program, Loyola University Chicago , Chicago, Illinois, USA.

出版信息

Microbiol Resour Announc. 2024 Aug 13;13(8):e0049124. doi: 10.1128/mra.00491-24. Epub 2024 Jul 16.

DOI:10.1128/mra.00491-24
PMID:39012134
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11320931/
Abstract

In this study, we present the draft genome of two strains isolated from catheterized urine specimens from females with overactive bladder (OAB) symptoms. Through the sequencing of these strains, we aim to better understand its presence and putative role in OAB in the female urinary tract.

摘要

在本研究中,我们展示了从患有膀胱过度活动症(OAB)症状的女性导尿尿液样本中分离出的两株菌株的基因组草图。通过对这些菌株进行测序,我们旨在更好地了解其在女性尿道OAB中的存在情况及其假定作用。

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本文引用的文献

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Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.推出细菌和病毒生物信息学资源中心(BV-BRC):一个整合 PATRIC、IRD 和 ViPR 的资源。
Nucleic Acids Res. 2023 Jan 6;51(D1):D678-D689. doi: 10.1093/nar/gkac1003.
2
Vaginal estrogen therapy is associated with increased Lactobacillus in the urine of postmenopausal women with overactive bladder symptoms.阴道雌激素治疗与绝经后伴有膀胱过度活动症症状的妇女尿液中乳杆菌增加有关。
Am J Obstet Gynecol. 2020 Nov;223(5):727.e1-727.e11. doi: 10.1016/j.ajog.2020.08.006. Epub 2020 Aug 11.
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ResFinder 4.0 for predictions of phenotypes from genotypes.ResFinder 4.0 用于基因型到表型的预测。
J Antimicrob Chemother. 2020 Dec 1;75(12):3491-3500. doi: 10.1093/jac/dkaa345.
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spp.: Update on Taxonomy, Clinical Aspects, and Emerging Antimicrobial Resistance.spp.:分类学、临床方面和新出现的抗菌药物耐药性的最新进展。
Clin Microbiol Rev. 2019 Jul 17;32(4). doi: 10.1128/CMR.00002-19. Print 2019 Sep 18.
5
Genome and plasmid context of two rmtG-carrying Enterobacter hormaechei isolated from urinary tract infections in Brazil.从巴西尿路感染中分离到的两株携带 rmtG 的肠杆菌的基因组和质粒背景。
J Glob Antimicrob Resist. 2020 Mar;20:36-40. doi: 10.1016/j.jgar.2019.06.020. Epub 2019 Jul 3.
6
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器:从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
8
The Clinical Urine Culture: Enhanced Techniques Improve Detection of Clinically Relevant Microorganisms.临床尿培养:改进技术提高临床相关微生物的检测率
J Clin Microbiol. 2016 May;54(5):1216-22. doi: 10.1128/JCM.00044-16. Epub 2016 Mar 9.
9
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Iran Biomed J. 2016;20(1):49-55. doi: 10.7508/ibj.2016.01.007. Epub 2015 Oct 25.
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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon:一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.