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一种常见海洋硅藻的混合营养生长

Mixotrophic growth of a ubiquitous marine diatom.

作者信息

Kumar Manish, Tibocha-Bonilla Juan D, Füssy Zoltán, Lieng Chloe, Schwenck Sarah M, Levesque Alice V, Al-Bassam Mahmoud M, Passi Anurag, Neal Maxwell, Zuniga Cristal, Kaiyom Farrah, Espinoza Josh L, Lim Hyungyu, Polson Shawn W, Allen Lisa Zeigler, Zengler Karsten

机构信息

Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.

Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.

出版信息

Sci Adv. 2024 Jul 19;10(29):eado2623. doi: 10.1126/sciadv.ado2623. Epub 2024 Jul 17.

Abstract

Diatoms are major players in the global carbon cycle, and their metabolism is affected by ocean conditions. Understanding the impact of changing inorganic nutrients in the oceans on diatoms is crucial, given the changes in global carbon dioxide levels. Here, we present a genome-scale metabolic model (MK1961) for , an in silico resource to understand uncharacterized metabolic functions in this ubiquitous diatom. MK1961 represents the largest diatom metabolic model to date, comprising 1961 open reading frames and 6718 reactions. With MK1961, we identified the metabolic response signature to cope with drastic changes in growth conditions. Comparing model predictions with Oceans transcriptomics data unraveled 's metabolism in situ. Unexpectedly, the diatom only grows photoautotrophically in 21% of the sunlit ocean samples, while the majority of the samples indicate a mixotrophic (71%) or, in some cases, even a heterotrophic (8%) lifestyle in the light. Our findings highlight s metabolic flexibility and its potential role in global carbon cycling.

摘要

硅藻是全球碳循环的主要参与者,其新陈代谢受海洋环境影响。鉴于全球二氧化碳水平的变化,了解海洋中无机养分变化对硅藻的影响至关重要。在此,我们提出了一个针对[具体硅藻名称未给出]的基因组规模代谢模型(MK1961),这是一个用于理解这种普遍存在的硅藻中未表征代谢功能的计算机资源。MK1961是迄今为止最大的硅藻代谢模型,包含1961个开放阅读框和6718个反应。利用MK1961,我们确定了应对生长条件剧烈变化的代谢反应特征。将模型预测结果与[具体海洋名称未给出]转录组学数据进行比较,揭示了[具体硅藻名称未给出]在原位的新陈代谢。出乎意料的是,在21%的有光照的海洋样本中,这种硅藻仅以光自养方式生长,而大多数样本显示其具有混合营养(71%)的生活方式,在某些情况下,甚至在光照下具有异养(8%)的生活方式。我们的研究结果突出了[具体硅藻名称未给出]的代谢灵活性及其在全球碳循环中的潜在作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3952/466952/c326f9c36d2b/sciadv.ado2623-f1.jpg

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