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作为潜在丝裂原活化蛋白激酶(MAPK)抑制剂的二氮杂金刚烷的虚拟筛选、分子对接、分子动力学模拟研究、密度泛函理论计算、药物代谢动力学/药物毒性预测及类药性研究

Virtual screening, molecular docking, MD simulation studies, DFT calculations, ADMET, and drug likeness of Diaza-adamantane as potential MAPK inhibitors.

作者信息

Gheidari Davood, Mehrdad Morteza, Hoseini Foroozan

机构信息

Department of Chemistry, Faculty of Science, University of Guilan, Rasht, Iran.

出版信息

Front Pharmacol. 2024 Jul 2;15:1360226. doi: 10.3389/fphar.2024.1360226. eCollection 2024.

Abstract

Multiple sclerosis (MS) is an autoimmune and inflammatory disease that destroys the protective coating of central nervous system (CNS) nerve fibers and affects over 2.8 million people worldwide. Despite several studies on new therapeutic targets and lead compounds, MS disease has limited treatment options. This condition may be caused by a complicated interaction of environmental and genetic variables. Studies showed that MS-associated microglial cells' increased activity may cause CNS inflammation and oligodendrocyte damage. Thus, screening for lead compounds that inhibit may protect brain cells and slow disease progression. The study aims to discover compounds that may inhibit as a novel approach for protecting the nervous system in managing MS. The study includes in methods, such as virtual screening, molecular docking, Density-functional theory (DFT) investigations (using the B3LYP/6-31++G(d,p) basis set in a gas phase environment), drug likeness scores, and molecular dynamic (MD) simulations. During the docking process with the protein, it was shown that the ligand L receptor had the best binding affinity, with a docking score of -6.18 kcal/mol. To investigate the stability of the binding, a 100 ns MD simulation was performed on the complex formed by the protein and L. The receptor-ligand combination exhibited significant stability throughout the duration of the MD simulation. Additionally, the pharmacokinetic and drug-likeness properties of these ligands suggest that they have the potential to be considered viable candidates for future development in MS management.

摘要

多发性硬化症(MS)是一种自身免疫性炎症疾病,会破坏中枢神经系统(CNS)神经纤维的保护涂层,全球有超过280万人受其影响。尽管对新的治疗靶点和先导化合物进行了多项研究,但MS疾病的治疗选择仍然有限。这种情况可能是由环境和遗传变量的复杂相互作用引起的。研究表明,与MS相关的小胶质细胞活性增加可能会导致中枢神经系统炎症和少突胶质细胞损伤。因此,筛选能够抑制(相关活性)的先导化合物可能会保护脑细胞并减缓疾病进展。该研究旨在发现可能抑制(相关活性)的化合物,作为在管理MS中保护神经系统的一种新方法。该研究包括虚拟筛选、分子对接、密度泛函理论(DFT)研究(在气相环境中使用B3LYP/6-31++G(d,p)基组)、药物相似性评分和分子动力学(MD)模拟等方法。在用(相关)蛋白质进行对接过程中,结果表明配体L受体具有最佳的结合亲和力,对接分数为-6.18千卡/摩尔。为了研究结合的稳定性,对由(相关)蛋白质和L形成的复合物进行了100纳秒的MD模拟。受体-配体组合在MD模拟的整个过程中表现出显著的稳定性。此外,这些配体的药代动力学和药物相似性特性表明,它们有可能被视为MS管理未来发展的可行候选物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/95bc/11253198/5ff0944259f3/fphar-15-1360226-g001.jpg

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