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利什曼原虫基因编辑图谱:利什曼原虫全基因组缺失突变体的适应性及蛋白质定位

LeishGEM: genome-wide deletion mutant fitness and protein localisations in Leishmania.

出版信息

Trends Parasitol. 2024 Aug;40(8):675-678. doi: 10.1016/j.pt.2024.06.003. Epub 2024 Jul 18.

Abstract

LeishGEM is a genome-wide functional annotation community resource for Leishmania mexicana, where deletion mutant growth in vitro and in vivo is measured and protein localisation is determined by endogenous tagging and LOPIT-DC (localisation of organelle proteins by isotope tagging with differential centrifugation) spatial proteomics. Data are being made available pre-publication via http://leishgem.org which allows data-driven identification of the mechanisms for Leishmania parasitism.

摘要

LeishGEM是一个针对墨西哥利什曼原虫的全基因组功能注释社区资源库,在该资源库中,会测定缺失突变体在体外和体内的生长情况,并通过内源性标记和LOPIT-DC(通过差速离心同位素标记进行细胞器蛋白质定位)空间蛋白质组学来确定蛋白质定位。数据在发表前可通过http://leishgem.org获取,该网站允许通过数据驱动来识别利什曼原虫寄生的机制。

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