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电子等密度面提供了原子和分子表面的热力学一致表示。

Electron iso-density surfaces provide a thermodynamically consistent representation of atomic and molecular surfaces.

作者信息

Alibakhshi Amin, Schäfer Lars V

机构信息

Center for Theoretical Chemistry, Ruhr University Bochum, 44780, Bochum, Germany.

Lehrstuhl für Theoretische Chemie II, Ruhr University Bochum, 44780, Bochum, Germany.

出版信息

Nat Commun. 2024 Jul 19;15(1):6086. doi: 10.1038/s41467-024-50408-8.

Abstract

The surface area of atoms and molecules plays a crucial role in shaping many physiochemical properties of materials. Despite its fundamental importance, precisely defining atomic and molecular surfaces has long been a puzzle. Among the available definitions, a straightforward and elegant approach by Bader describes a molecular surface as an iso-density surface beyond which the electron density drops below a certain cut-off. However, so far neither this theory nor a decisive value for the density cut-off have been amenable to experimental verification due to the limitations of conventional experimental methods. In the present study, we employ a state-of-the-art experimental method based on the recently developed concept of thermodynamically effective (TE) surfaces to tackle this longstanding problem. By studying a set of 104 molecules, a close to perfect agreement between quantum chemical evaluations of iso-density surfaces contoured at a cut-off density of 0.0016 a.u. and experimental results obtained via thermodynamic phase change data is demonstrated, with a mean unsigned percentage deviation of 1.6% and a correlation coefficient of 0.995. Accordingly, we suggest the iso-density surface contoured at an electron density value of 0.0016 a.u. as a representation of the surface of atoms and molecules.

摘要

原子和分子的表面积在塑造材料的许多物理化学性质方面起着至关重要的作用。尽管其具有根本重要性,但精确界定原子和分子表面长期以来一直是个难题。在现有的定义中,巴德提出的一种直接且精妙的方法将分子表面描述为一个等密度面,在该等密度面之外电子密度降至某个截止值以下。然而,由于传统实验方法的局限性,到目前为止,无论是该理论还是密度截止的决定性值都无法通过实验验证。在本研究中,我们采用了一种基于最近发展的热力学有效(TE)表面概念的先进实验方法来解决这个长期存在的问题。通过研究一组104个分子,结果表明,在截止密度为0.0016 a.u.时绘制的等密度面的量子化学评估值与通过热力学相变数据获得的实验结果之间达成了近乎完美的一致,平均无符号百分比偏差为1.6%,相关系数为0.995。因此,我们建议将在电子密度值为0.0016 a.u.时绘制的等密度面作为原子和分子表面的一种表示。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3164/11271626/ddac39be1e68/41467_2024_50408_Fig1_HTML.jpg

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