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通过机器学习极化连续介质溶剂化模型改进溶剂化自由能的预测

Improved prediction of solvation free energies by machine-learning polarizable continuum solvation model.

作者信息

Alibakhshi Amin, Hartke Bernd

机构信息

Theoretical Chemistry, Institute for Physical Chemistry, Christian-Albrechts-University, Olshausenstr. 40, Kiel, Germany.

出版信息

Nat Commun. 2021 Jun 18;12(1):3584. doi: 10.1038/s41467-021-23724-6.

Abstract

Theoretical estimation of solvation free energy by continuum solvation models, as a standard approach in computational chemistry, is extensively applied by a broad range of scientific disciplines. Nevertheless, the current widely accepted solvation models are either inaccurate in reproducing experimentally determined solvation free energies or require a number of macroscopic observables which are not always readily available. In the present study, we develop and introduce the Machine-Learning Polarizable Continuum solvation Model (ML-PCM) for a substantial improvement of the predictability of solvation free energy. The performance and reliability of the developed models are validated through a rigorous and demanding validation procedure. The ML-PCM models developed in the present study improve the accuracy of widely accepted continuum solvation models by almost one order of magnitude with almost no additional computational costs. A freely available software is developed and provided for a straightforward implementation of the new approach.

摘要

作为计算化学中的一种标准方法,连续介质溶剂化模型对溶剂化自由能的理论估计被广泛应用于众多科学学科。然而,当前广泛接受的溶剂化模型要么在重现实验测定的溶剂化自由能方面不准确,要么需要一些并非总能轻易获得的宏观可观测量。在本研究中,我们开发并引入了机器学习极化连续介质溶剂化模型(ML-PCM),以大幅提高溶剂化自由能预测的可预测性。通过严格且苛刻的验证程序对所开发模型的性能和可靠性进行了验证。本研究中开发的ML-PCM模型在几乎不增加额外计算成本的情况下,将广泛接受的连续介质溶剂化模型的准确性提高了近一个数量级。我们开发并提供了一个免费软件,以便直接实施这种新方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4373/8213834/1329a4e4790b/41467_2021_23724_Fig1_HTML.jpg

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