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生物信息学和实验验证鉴定强直性脊柱炎中的坏死性凋亡相关基因。

Identification of necroptosis-related genes in ankylosing spondylitis by bioinformatics and experimental validation.

机构信息

Department of Joint Surgery, Honghui Hospital, Xi'an Jiaotong University, Shaanxi, China.

Department of Laboratory, Honghui Hospital, Xi'an Jiaotong University, Shaanxi, China.

出版信息

J Cell Mol Med. 2024 Jul;28(14):e18557. doi: 10.1111/jcmm.18557.

Abstract

The pathogenesis of ankylosing spondylitis (AS) remains unclear, and while recent studies have implicated necroptosis in various autoimmune diseases, an investigation of its relationship with AS has not been reported. In this study, we utilized the Gene Expression Omnibus database to compare gene expressions between AS patients and healthy controls, identifying 18 differentially expressed necroptosis-related genes (DENRGs), with 8 upregulated and 10 downregulated. Through the application of three machine learning algorithms-least absolute shrinkage and selection operation, support vector machine-recursive feature elimination and random forest-two hub genes, FASLG and TARDBP, were pinpointed. These genes demonstrated high specificity and sensitivity for AS diagnosis, as evidenced by receiver operating characteristic curve analysis. These findings were further supported by external datasets and cellular experiments, which confirmed the downregulation of FASLG and upregulation of TARDBP in AS patients. Immune cell infiltration analysis suggested that CD4 T cells, CD8 T cells, NK cells and neutrophils may be associated with the development of AS. Notably, in the group with high FASLG expression, there was a significant infiltration of CD8 T cells, memory-activated CD4 T cells and resting NK cells, with relatively less infiltration of memory-resting CD4 T cells and neutrophils. Conversely, in the group with high TARDBP expression, there was enhanced infiltration of naïve CD4 T cells and M0 macrophages, with a reduced presence of memory-resting CD4 T cells. In summary, FASLG and TARDBP may contribute to AS pathogenesis by regulating the immune microenvironment and immune-related signalling pathways. These findings offer new insights into the molecular mechanisms of AS and suggest potential new targets for therapeutic strategies.

摘要

强直性脊柱炎(AS)的发病机制尚不清楚,虽然最近的研究表明坏死性凋亡与各种自身免疫性疾病有关,但尚未有研究调查其与 AS 的关系。在本研究中,我们利用基因表达综合数据库比较了 AS 患者和健康对照者之间的基因表达,确定了 18 个差异表达的坏死性凋亡相关基因(DENRGs),其中 8 个上调,10 个下调。通过应用三种机器学习算法——最小绝对收缩和选择操作、支持向量机递归特征消除和随机森林,鉴定出了两个枢纽基因 FASLG 和 TARDBP。这两个基因对 AS 的诊断具有较高的特异性和敏感性,这一点通过接受者操作特征曲线分析得到了证实。这些发现得到了外部数据集和细胞实验的进一步支持,这些实验证实了 AS 患者中 FASLG 的下调和 TARDBP 的上调。免疫细胞浸润分析表明,CD4 T 细胞、CD8 T 细胞、NK 细胞和中性粒细胞可能与 AS 的发生发展有关。值得注意的是,在 FASLG 高表达组中,CD8 T 细胞、记忆激活的 CD4 T 细胞和静止 NK 细胞浸润明显增多,而记忆静止的 CD4 T 细胞和中性粒细胞浸润相对较少。相反,在 TARDBP 高表达组中,幼稚 CD4 T 细胞和 M0 巨噬细胞浸润增强,而记忆静止的 CD4 T 细胞减少。总之,FASLG 和 TARDBP 可能通过调节免疫微环境和免疫相关信号通路参与 AS 的发病机制。这些发现为 AS 的分子机制提供了新的见解,并提示了潜在的新的治疗策略靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1379/11258886/65beb385c42c/JCMM-28-e18557-g006.jpg

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