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基于网络药理学、分子对接和分子动力学模拟的地黄苷 A 治疗系统性红斑狼疮的作用机制。

Mechanisms of Rehmannioside A Against Systemic Lupus Erythematosus Based on Network Pharmacology, Molecular Docking and Molecular Dynamics Simulation.

机构信息

Department of Dermatology, Guangdong Provincial Key Laboratory of Major Obstetric Diseases, Guangdong Provincial Clinical Research Center for Obstetrics and Gynecology, The Third Affiliated Hospital of Guangzhou Medica1 University, Guangzhou, China.

出版信息

Cell Biochem Biophys. 2024 Dec;82(4):3489-3498. doi: 10.1007/s12013-024-01435-1. Epub 2024 Jul 20.

Abstract

The effect of rehmannioside A (ReA) on systemic lupus erythematosus (SLE) is not clear and needs further study. In this study, SLE-related targets were obtained from the DisGeNet and GeneCards databases, while ReA-related targets were obtained from the SwissTarget and SuperPred databases. A protein-protein interaction network of intersected targets was constructed using the STRING platform. After selecting the intersected targets, GO and KEGG enrichment analyses were performed via the R package "clusterProfiler". The relationships between ReA and various core targets were assessed via molecular docking, and molecular dynamics simulation was conducted for optimal core protein-compound complexes obtained by molecular docking. The top five targets in the ranking of degree value were HSP90AA1, HIF1A, PIK3CA, MTOR, and TLR4. Significant biological processes mainly included response to oxidative stress and response to reactive oxygen species. The potential pathways of ReA in the treatment of SLE mainly focused on the PI3K-Akt signaling pathway, neutrophil extracellular trap formation, and Apoptosis. Molecular docking showed that ReA had the highest binding affinity for mTOR, suggesting that mTOR is a key target of ReA against SLE. Molecular dynamics simulations revealed good binding abilities between ReA and mTOR. In conclusion, ReA exerts its effects on SLE through multiple targets and pathways, with mTOR being a key target of ReA against SLE.

摘要

瑞马辛烷 A(ReA)对系统性红斑狼疮(SLE)的影响尚不清楚,需要进一步研究。本研究从 DisGeNet 和 GeneCards 数据库中获得与 SLE 相关的靶点,从 SwissTarget 和 SuperPred 数据库中获得与 ReA 相关的靶点。使用 STRING 平台构建了交叉靶点的蛋白质-蛋白质相互作用网络。选择交叉靶点后,通过 R 包“clusterProfiler”进行 GO 和 KEGG 富集分析。通过分子对接评估 ReA 与各种核心靶点之间的关系,并对通过分子对接获得的最佳核心蛋白-化合物复合物进行分子动力学模拟。度值排名前五的靶点为 HSP90AA1、HIF1A、PIK3CA、MTOR 和 TLR4。显著的生物学过程主要包括对氧化应激和活性氧的反应。ReA 治疗 SLE 的潜在途径主要集中在 PI3K-Akt 信号通路、中性粒细胞胞外诱捕网形成和细胞凋亡。分子对接表明 ReA 与 mTOR 具有最高的结合亲和力,提示 mTOR 是 ReA 治疗 SLE 的关键靶点。分子动力学模拟揭示了 ReA 与 mTOR 之间良好的结合能力。总之,ReA 通过多个靶点和途径发挥对 SLE 的作用,其中 mTOR 是 ReA 治疗 SLE 的关键靶点。

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