Luo Min, Zhao Cheng, Zhao Yanhua, Wang Yin, Li Peifeng
Institute for Translational Medicine, Qingdao University, Qingdao, 266000, China.
The Third Affiliated Hospital of Zunyi Medical University, The First People's Hospital of Zunyi, Zunyi, Guizhou, 563000, China.
Heliyon. 2024 Jun 22;10(13):e33344. doi: 10.1016/j.heliyon.2024.e33344. eCollection 2024 Jul 15.
Homer protein homolog 3 (), a factor implicated in both physiological and pathological processes, has been studied extensively to determine the relationship between its expression level and the prognosis of various malignancies. However, the significance and clinicopathological role of in colorectal adenocarcinoma remain unclear.
In this study, bioinformatics techniques were used to find the correlation between high expression levels and clinicopathological features of colorectal adenocarcinoma (COAD) patients.
Cellular experiments confirmed the differential expression of in tumor cells compared to normal cells. overexpression was significantly associated with COAD staging and carcinoembryonic antigen (CEA) levels. Patients with high expression levels have a poor prognosis. expression levels can be distinguished more accurately between tumor and non-tumor tissues (AUC = 0.634). The gene variation rate in COAD tissue was 0.7 %. Moreover, 16 of the 22 DNA methylation sites in were associated with COAD prognosis. Our findings confirmed that was positively correlated with immune cell infiltration and immune checkpoints (PD-1, CTLA-4, LMTK3, and LAG3) in COAD, Specifically, we will clearly state that while there is statistical significance, the actual strength of the correlations is weak. During KEGG enrichment analysis, was enriched along with DLG4 and SHANK1 in glutamatergic synapses. Additionally, upstream microRNAs that could bind to were predicted. These findings suggest that might be involved in COAD development and immune regulation.
acts as a potential biomarker that can facilitate innovative developments in the diagnosis and prognostic assessment of COAD.
荷马蛋白同源物3(Homer protein homolog 3,Homer3)是一种参与生理和病理过程的因子,人们对其表达水平与各种恶性肿瘤预后之间的关系进行了广泛研究。然而,Homer3在结直肠癌中的意义和临床病理作用仍不清楚。
在本研究中,运用生物信息学技术来寻找Homer3高表达水平与结直肠癌(COAD)患者临床病理特征之间的相关性。
细胞实验证实了与正常细胞相比,Homer3在肿瘤细胞中的差异表达。Homer3过表达与COAD分期和癌胚抗原(CEA)水平显著相关。Homer3表达水平高的患者预后较差。Homer3表达水平在肿瘤组织和非肿瘤组织之间能更准确地区分(曲线下面积=0.634)。COAD组织中Homer3基因变异率为0.7%。此外,Homer3的22个DNA甲基化位点中有16个与COAD预后相关。我们的研究结果证实,Homer3与COAD中的免疫细胞浸润和免疫检查点(PD-1、CTLA-4、LMTK3和LAG3)呈正相关,具体而言,我们将明确指出,虽然存在统计学意义,但相关性的实际强度较弱。在京都基因与基因组百科全书(KEGG)富集分析中,Homer3与盘状蛋白结构域蛋白4(DLG4)和SHANK1在谷氨酸能突触中共同富集。此外,还预测了可与Homer3结合的上游微小RNA。这些发现表明,Homer3可能参与COAD的发生发展和免疫调节。
Homer3作为一种潜在的生物标志物,可促进结直肠癌诊断和预后评估的创新发展。