Sun Zhe, Wang Haodi, Xu Yao, Liu Yichi, Wang Lu, Zhou Ruijie, Zhou Runlong, Ma Wenjian, Zhang Tongcun
College of Biotechnology, Tianjin University of Science and Technology, Tianjin, China.
Institute of Biology and Medicine, College of Life Sciences and Health, Wuhan University of Science and Technology, Wuhan, China.
J Gastrointest Oncol. 2024 Apr 30;15(2):641-667. doi: 10.21037/jgo-23-956. Epub 2024 Apr 29.
Colon adenocarcinoma (COAD) is a prevalent gastrointestinal malignant disease with high mortality rate, and identification of novel prognostic biomarkers and therapeutic targets is urgently needed. Although neurexophilin 4 (NXPH4) has been investigated in several tumors, its role in COAD remains unclear. The aim of this study was to explore the prognostic value and potential functions of NXPH4 in COAD.
The expression of NXPH4 in COAD were analyzed using The Cancer Genome Atlas (TCGA) and datasets from the Gene Expression Omnibus (GEO) database. The prognostic value of NXPH4 was determined using Kaplan-Meier analysis and Cox regression analysis. To investigate the possible mechanism underlying the role of NXPH4 in COAD, Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and gene set enrichment analysis (GSEA) were employed. The correlation between NXPH4 expression and immune cell infiltration levels was examined thorough single-sample gene set enrichment analysis (ssGSEA). Furthermore, the competing endogenous RNA (ceRNA) regulatory network that may be involved in NXPH4 in COAD was predicted and constructed through a variety of databases.
NXPH4 expression was significantly higher in COAD tissue compared with normal colon tissues. Meanwhile, high expression of NXPH4 was associated with poor prognosis in COAD patients. GO-KEGG and GSEA analyses indicated that NXPH4 was associated with glycolysis and hypoxia pathway, and may promote COAD progression and metastasis by modulating metabolic reprogramming. ssGSEA analysis demonstrated that NXPH4 expression also associated with immune infiltration. Furthermore, we identified various microRNAs (miRNAs) and long noncoding RNAs (lncRNAs) as upstream regulators of NXPH4 in COAD.
The present study revealed that high expression of NXPH4 is associated with tumor progression, metabolic reprogramming, and immune infiltration. These findings suggest that NXPH4 could serve as a reliable prognostic biomarker and a promising therapeutic target in COAD.
结肠腺癌(COAD)是一种常见的胃肠道恶性疾病,死亡率高,迫切需要鉴定新的预后生物标志物和治疗靶点。尽管在几种肿瘤中已对神经纤毛蛋白4(NXPH4)进行了研究,但其在COAD中的作用仍不清楚。本研究的目的是探讨NXPH4在COAD中的预后价值和潜在功能。
使用癌症基因组图谱(TCGA)和来自基因表达综合数据库(GEO)的数据集分析COAD中NXPH4的表达。使用Kaplan-Meier分析和Cox回归分析确定NXPH4的预后价值。为了研究NXPH4在COAD中作用的潜在机制,采用了基因本体论(GO)、京都基因与基因组百科全书(KEGG)和基因集富集分析(GSEA)。通过单样本基因集富集分析(ssGSEA)检测NXPH4表达与免疫细胞浸润水平之间的相关性。此外,通过各种数据库预测并构建了可能参与COAD中NXPH4的竞争性内源RNA(ceRNA)调控网络。
与正常结肠组织相比,COAD组织中NXPH4表达显著更高。同时,NXPH4的高表达与COAD患者的不良预后相关。GO-KEGG和GSEA分析表明,NXPH4与糖酵解和缺氧途径相关,可能通过调节代谢重编程促进COAD进展和转移。ssGSEA分析表明,NXPH4表达也与免疫浸润相关。此外,我们鉴定了多种微小RNA(miRNA)和长链非编码RNA(lncRNA)作为COAD中NXPH4的上游调节因子。
本研究表明,NXPH4的高表达与肿瘤进展、代谢重编程和免疫浸润相关。这些发现表明,NXPH4可作为COAD中可靠的预后生物标志物和有前景的治疗靶点。