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瓜类CmPHT1 基因的鉴定及其在磷吸收和转运中的应激响应调控

Characterization and stress-responsive regulation of CmPHT1 genes involved in phosphate uptake and transport in Melon (Cucumis melo L.).

机构信息

Key Laboratory of Urban Agriculture (South), Ministry of Agriculture, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.

Jiangsu Agri-animal Husbandry Vocational College, Taizhou, China.

出版信息

BMC Plant Biol. 2024 Jul 23;24(1):696. doi: 10.1186/s12870-024-05405-w.

Abstract

BACKGROUND

Phosphorus (P) deficiency, a major nutrient stress, greatly hinders plant growth. Phosphate (Pi) uptake in plant roots relies on PHT1 family transporters. However, melon (Cucumis melo L.) lacks comprehensive identification and characterization of PHT1 genes, particularly their response patterns under diverse stresses.

RESULTS

This study identified and analyzed seven putative CmPHT1 genes on chromosomes 3, 4, 5, 6, and 7 using the melon genome. Phylogenetic analysis revealed shared motifs, domain compositions, and evolutionary relationships among genes with close histories. Exon number varied from 1 to 3. Collinearity analysis suggested segmental and tandem duplications as the primary mechanisms for CmPHT1 gene family expansion. CmPHT1;4 and CmPHT1;5 emerged as a tandemly duplicated pair. Analysis of cis-elements in CmPHT1 promoters identified 14 functional categories, including putative PHR1-binding sites (P1BS) in CmPHT1;4, CmPHT1;6, and CmPHT1;7. We identified that three WRKY transcription factors regulated CmPHT1;5 expression by binding to its W-box element. Notably, CmPHT1 promoters harbored cis-elements responsive to hormones and abiotic factors. Different stresses regulated CmPHT1 expression differently, suggesting that the adjusted expression patterns might contribute to plant adaptation.

CONCLUSIONS

This study unveils the characteristics, evolutionary diversity, and stress responsiveness of CmPHT1 genes in melon. These findings lay the foundation for in-depth investigations into their functional mechanisms in Cucurbitaceae crops.

摘要

背景

磷(P)缺乏是一种主要的营养胁迫,极大地阻碍了植物的生长。植物根部的磷酸盐(Pi)吸收依赖于 PHT1 家族转运蛋白。然而,甜瓜(Cucumis melo L.)缺乏对 PHT1 基因的全面鉴定和特征描述,特别是它们在各种胁迫下的响应模式。

结果

本研究利用甜瓜基因组,在染色体 3、4、5、6 和 7 上鉴定和分析了七个推定的 CmPHT1 基因。系统发育分析揭示了具有密切历史的基因之间的共享基序、结构域组成和进化关系。外显子数从 1 到 3 不等。共线性分析表明,片段和串联重复是 CmPHT1 基因家族扩张的主要机制。CmPHT1;4 和 CmPHT1;5 作为串联重复对出现。在 CmPHT1 启动子中的顺式元件分析中鉴定出 14 个功能类别,包括 CmPHT1;4、CmPHT1;6 和 CmPHT1;7 中的假定 PHR1 结合位点(P1BS)。我们发现三个 WRKY 转录因子通过结合其 W 框元件来调节 CmPHT1;5 的表达。值得注意的是,CmPHT1 启动子含有对激素和非生物因素有反应的顺式元件。不同的胁迫以不同的方式调节 CmPHT1 的表达,表明调整的表达模式可能有助于植物的适应。

结论

本研究揭示了甜瓜中 CmPHT1 基因的特征、进化多样性和对胁迫的响应。这些发现为深入研究葫芦科作物中它们的功能机制奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d83d/11264433/31b7f6329cbe/12870_2024_5405_Fig1_HTML.jpg

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