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深海真菌代谢产物作为埃博拉和马尔堡病毒 VP35 和 VP40 抑制剂的计算机探索。

In silico exploration of deep-sea fungal metabolites as inhibitor of Ebola and Marburg VP35 and VP40.

机构信息

Department of Pharmacognosy, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia.

出版信息

PLoS One. 2024 Jul 25;19(7):e0307579. doi: 10.1371/journal.pone.0307579. eCollection 2024.

DOI:10.1371/journal.pone.0307579
PMID:39052567
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11271895/
Abstract

VP30 and VP40 proteins of Ebola and Marburg viruses have been recognized as potential targets for antiviral drug development due to their essential roles in the viral lifecycle. Targeting these proteins could disrupt key stages of the viral replication process, inhibiting the viruses' ability to propagate and cause disease. The current study aims to perform molecular docking and virtual screening on deep-sea fungal metabolites targeting Marburg virus VP40 Dimer, matrix protein VP40 from Ebola virus Sudan, Ebola VP35 Interferon Inhibitory Domain, and VP35 from Marburg virus. The top ten compounds for each protein target were chosen using the glide score. All the compounds obtained indicate a positive binding interaction. Furthermore, AdmetSAR was utilized to investigate the pharmacokinetics of the inhibitors chosen. Gliotoxin was used as a ligand with Marburg virus VP40 Dimer, Austinol with matrix protein VP40 from Ebola virus Sudan, Ozazino-cyclo-(2,3-dihydroxyl-trp-tyr) with Ebola VP35 Interferon Inhibitory Domain, and Dehydroaustinol with VP35 from Marburg virus. MD modeling and MMPBSA studies were used to provide a better understanding of binding behaviors. Pre-clinical experiments can assist validate our in-silico studies and assess whether the molecule can be employed as an anti-viral drug.

摘要

埃博拉病毒和马尔堡病毒的 VP30 和 VP40 蛋白因其在病毒生命周期中的重要作用而被认为是抗病毒药物开发的潜在靶标。针对这些蛋白质可以破坏病毒复制过程的关键阶段,抑制病毒的繁殖和致病能力。本研究旨在针对马尔堡病毒 VP40 二聚体、埃博拉病毒苏丹型基质蛋白 VP40、埃博拉病毒 VP35 干扰素抑制结构域和马尔堡病毒 VP35 对深海真菌代谢产物进行分子对接和虚拟筛选。使用 glide 评分选择每个蛋白质靶标排名前十的化合物。所有获得的化合物均表明具有正结合相互作用。此外,还利用 AdmetSAR 研究了所选抑制剂的药代动力学性质。利用Gliotoxin 作为配体与马尔堡病毒 VP40 二聚体结合,Austinol 与埃博拉病毒苏丹型基质蛋白 VP40 结合,Ozazino-cyclo-(2,3-dihydroxyl-trp-tyr)与埃博拉病毒 VP35 干扰素抑制结构域结合,Dehydroaustinol 与马尔堡病毒 VP35 结合。MD 建模和 MMPBSA 研究用于提供更好的结合行为理解。临床前实验可以帮助验证我们的计算机研究,并评估该分子是否可作为抗病毒药物。

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