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先驱转录因子的阴阳两面:抑制和激活的双重作用。

The yin and yang of pioneer transcription factors: Dual roles in repression and activation.

机构信息

Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

Department of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

出版信息

Bioessays. 2024 Oct;46(10):e2400138. doi: 10.1002/bies.202400138. Epub 2024 Jul 26.

DOI:10.1002/bies.202400138
PMID:39058903
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11427146/
Abstract

Pioneer transcription factors, by virtue of their ability to target nucleosomal DNA in silent chromatin, play crucial roles in eliciting cell fate decisions during development and cellular reprogramming. In addition to their well-established role in chromatin opening to activate gene expression programs, recent studies have demonstrated that pioneer factors have the complementary function of being able to silence the starting cell identity through targeted chromatin repression. Given recent discoveries regarding the repressive aspect of pioneer function, we discuss the basis by which pioneer factors can suppress alternative lineage programs in the context of cell fate control.

摘要

先驱转录因子凭借其在沉默染色质中靶向核小体 DNA 的能力,在发育和细胞重编程过程中诱导细胞命运决定方面发挥着关键作用。除了在打开染色质以激活基因表达程序方面的既定作用外,最近的研究还表明,先驱因子具有通过靶向染色质抑制来沉默起始细胞身份的互补功能。鉴于最近关于先驱功能的抑制方面的发现,我们将讨论先驱因子如何在细胞命运控制的背景下抑制替代谱系程序的基础。

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本文引用的文献

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2
Detection of new pioneer transcription factors as cell-type-specific nucleosome binders.检测新的先驱转录因子作为细胞类型特异性核小体结合蛋白。
Elife. 2024 Jan 31;12:RP88936. doi: 10.7554/eLife.88936.
3
Pioneer and PRDM transcription factors coordinate bivalent epigenetic states to safeguard cell fate.先驱和 PRDM 转录因子协调双价表观遗传状态以保障细胞命运。
Mol Cell. 2024 Feb 1;84(3):476-489.e10. doi: 10.1016/j.molcel.2023.12.007. Epub 2024 Jan 10.
4
The pioneer factor SOX9 competes for epigenetic factors to switch stem cell fates.先驱因子 SOX9 竞争表观遗传因子以转换干细胞命运。
Nat Cell Biol. 2023 Aug;25(8):1185-1195. doi: 10.1038/s41556-023-01184-y. Epub 2023 Jul 24.
5
Different chromatin-scanning modes lead to targeting of compacted chromatin by pioneer factors FOXA1 and SOX2.不同的染色质扫描模式导致先驱因子 FOXA1 和 SOX2 靶向致密染色质。
Cell Rep. 2023 Jul 25;42(7):112748. doi: 10.1016/j.celrep.2023.112748. Epub 2023 Jul 4.
6
Transcription factor antagonism regulates heterogeneity in embryonic stem cell states.转录因子拮抗作用调节胚胎干细胞状态的异质性。
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Extensive co-binding and rapid redistribution of NANOG and GATA6 during emergence of divergent lineages.广泛的共结合和 NANOG 和 GATA6 的快速重分布在不同谱系的出现过程中。
Nat Commun. 2022 Jul 23;13(1):4257. doi: 10.1038/s41467-022-31938-5.
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