Zheng Shuang, Cui Ronghua, Yu Dingyi, Niu Yanxiang, Wu Xuehan, Yang Faming, Chen Jingdi
Marine College, Shandong University, Weihai 264209, China.
Shandong Laboratory of Advanced Materials and Green Manufacturing, Yantai 265599, China.
Antioxidants (Basel). 2024 Jun 28;13(7):790. doi: 10.3390/antiox13070790.
Previous studies have found that the self-assembled supramolecules of meat peptides have antioxidant effects. Therefore, this study aims to isolate and identify novel antioxidant peptides with self-assembly characteristics and analyze their structure-activity relationship through molecular docking and molecular dynamics simulation. The in vitro results show that as the purification steps increased, the antioxidant activity of peptides became stronger. Additionally, the purification step did not affect its pH-responsive self-assembly. Using LC-MS/MS, 298 peptide sequences were identified from the purified fraction PF1, and 12 safe and antioxidant-active peptides were acquired through in silico screening. The molecular docking results show that they had good binding interactions with key antioxidant-related protein ligands (KEAP1 (Kelch-like ECH-associated protein 1) and MPO (myeloperoxidase)). The peptide QPPALNDSYLYGPQ, with the lowest docking energy, was selected for a 100 ns molecular dynamics simulation. The results show that the peptide QPPALNDSYLYGPQ exhibited excellent stability when docked with KEAP1 and MPO, thus exerting antioxidant effects by regulating the KEAP1-NRF2 pathway and inhibiting MPO activity. This study further validates the antioxidant and self-assembling properties of the self-assembled supramolecules of meat peptide and shows its potential for developing new, effective, and stable antioxidants.
先前的研究发现,肉肽的自组装超分子具有抗氧化作用。因此,本研究旨在分离和鉴定具有自组装特性的新型抗氧化肽,并通过分子对接和分子动力学模拟分析其构效关系。体外实验结果表明,随着纯化步骤的增加,肽的抗氧化活性增强。此外,纯化步骤不影响其pH响应性自组装。使用液相色谱-串联质谱(LC-MS/MS)从纯化组分PF1中鉴定出298个肽序列,并通过计算机筛选获得了12个安全且具有抗氧化活性的肽。分子对接结果表明,它们与关键的抗氧化相关蛋白配体(KEAP1(kelch样ECH相关蛋白1)和MPO(髓过氧化物酶))具有良好的结合相互作用。选择对接能量最低的肽QPPALNDSYLYGPQ进行100 ns的分子动力学模拟。结果表明,肽QPPALNDSYLYGPQ与KEAP1和MPO对接时表现出优异的稳定性,从而通过调节KEAP1-NRF2途径和抑制MPO活性发挥抗氧化作用。本研究进一步验证了肉肽自组装超分子的抗氧化和自组装特性,并展示了其开发新型、有效和稳定抗氧化剂的潜力。