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从计算机模拟和体外实验两方面解析朝藿定 C 抑制β-葡萄糖醛酸苷酶的分子机制。

Bridging in silico and in vitro perspectives to unravel molecular mechanisms underlying the inhibition of β-glucuronidase by coumarins from Hibiscus trionum.

机构信息

Chemistry Department, Faculty of Science, Beni-Suef University, Beni-Suef 62514, Egypt.

Department of Medical Laboratories, College of Applied Medical Sciences, Qassim University, 51452 Buraydah, Saudi Arabia.

出版信息

Biophys Chem. 2024 Oct;313:107304. doi: 10.1016/j.bpc.2024.107304. Epub 2024 Jul 26.

DOI:10.1016/j.bpc.2024.107304
PMID:39079275
Abstract

Unraveling the intricacies of β-glucuronidase inhibition is pivotal for developing effective strategies in applications specific to gastrointestinal health and drug metabolism. Our study investigated the efficacy of some Hibiscus trionum phytochemicals as β-glucuronidase inhibitors. The results showed that cleomiscosin A and mansonone H emerged as the most potent inhibitors, with IC values of 3.97 ± 0.35 μM and 10.32 ± 1.85 μM, respectively. Mechanistic analysis of β-glucuronidase inhibition indicated that cleomiscosin A and the reference drug EGCG displayed a mixed inhibition mode against β-glucuronidase, while mansonone H exhibited noncompetitive inhibition against β-glucuronidase. Docking studies revealed that cleomiscosin A and mansonone H exhibited the lowest binding affinities, occupying the same site as EGCG, and engaged significant key residues in their binding mechanisms. Using a 30 ns molecular dynamics (MD) simulation, we explored the interaction dynamics of isolated compounds with β-glucuronidase. Analysis of various MD parameters showed that cleomiscosin A and mansonone H exhibited consistent trajectories and significant energy stabilization with β-glucuronidase. These computational insights complemented experimental findings, underscoring the potential of cleomiscosin A and mansonone H as β-glucuronidase inhibitors.

摘要

解析β-葡萄糖醛酸酶抑制作用的复杂性对于开发特定于胃肠道健康和药物代谢的应用中的有效策略至关重要。我们的研究调查了一些芙蓉属植物化学物质作为β-葡萄糖醛酸酶抑制剂的功效。结果表明,Cleomiscosin A 和曼氏酮 H 是最有效的抑制剂,IC 值分别为 3.97±0.35 μM 和 10.32±1.85 μM。β-葡萄糖醛酸酶抑制的机制分析表明,Cleomiscosin A 和参比药物 EGCG 对β-葡萄糖醛酸酶表现出混合抑制模式,而曼氏酮 H 对β-葡萄糖醛酸酶表现出非竞争性抑制。对接研究表明,Cleomiscosin A 和曼氏酮 H 表现出最低的结合亲和力,占据与 EGCG 相同的位置,并在其结合机制中涉及重要的关键残基。使用 30 ns 分子动力学 (MD) 模拟,我们探索了分离化合物与β-葡萄糖醛酸酶的相互作用动力学。对各种 MD 参数的分析表明,Cleomiscosin A 和曼氏酮 H 与β-葡萄糖醛酸酶表现出一致的轨迹和显著的能量稳定。这些计算见解补充了实验结果,强调了 Cleomiscosin A 和曼氏酮 H 作为β-葡萄糖醛酸酶抑制剂的潜力。

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