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多氨酰基-tRNA合成酶复合物的形成限制了混杂的tRNA校对。

multi-aminoacyl-tRNA synthetase complex formation limits promiscuous tRNA proofreading.

作者信息

Watkins Rylan R, Vradi Anna, Shulgina Irina, Musier-Forsyth Karin

机构信息

Department of Chemistry and Biochemistry, Center for RNA Biology, Ohio State University, Columbus, OH, United States.

出版信息

Front Microbiol. 2024 Jul 16;15:1445687. doi: 10.3389/fmicb.2024.1445687. eCollection 2024.

Abstract

Faithful mRNA decoding depends on the accuracy of aminoacyl-tRNA synthetases (ARSs). Aminoacyl-tRNA proofreading mechanisms have been well-described in bacteria, humans, and plants. However, our knowledge of translational fidelity in protozoans is limited. () is a eukaryotic, protozoan pathogen that causes Human African Trypanosomiasis, a fatal disease if untreated. undergoes many physiological changes that are dictated by nutrient availability throughout its insect-mammal lifecycle. In the glucose-deprived insect vector, the tsetse fly, use proline to make ATP via mitochondrial respiration. Alanine is one of the major by-products of proline consumption. We hypothesize that the elevated alanine pool challenges prolyl-tRNA synthetase (ProRS), an ARS known to misactivate alanine in all three domains of life, resulting in high levels of misaminoacylated Ala-tRNA. encodes two domains that are members of the INS superfamily of aminoacyl-tRNA deacylases. One homolog is appended to the N-terminus of ProRS, and a second is the major domain of multi-aminoacyl-tRNA synthetase complex (MSC)-associated protein 3 (MCP3). Both ProRS and MCP3 are housed in the MSC. Here, we purified ProRS and MCP3 and observed robust Ala-tRNA deacylation activity from both enzymes . Size-exclusion chromatography multi-angle light scattering used to probe the oligomerization state of MCP3 revealed that although its unique N-terminal extension confers homodimerization in the absence of tRNA, the protein binds to tRNA as a monomer. Kinetic assays showed MCP3 alone has relaxed tRNA specificity and promiscuously hydrolyzes cognate Ala-tRNA; this activity is significantly reduced in the presence of alanyl-tRNA synthetase, also housed in the MSC. Taken together, our results provide insight into translational fidelity mechanisms in and lay the foundation for exploring MSC-associated proteins as novel drug targets.

摘要

准确的mRNA解码依赖于氨酰-tRNA合成酶(ARS)的准确性。氨酰-tRNA校对机制在细菌、人类和植物中已有详尽描述。然而,我们对原生动物翻译保真度的了解有限。()是一种真核原生动物病原体,可导致人类非洲锥虫病,若不治疗,这是一种致命疾病。在其昆虫-哺乳动物生命周期中,()会经历许多由营养物质可用性决定的生理变化。在缺乏葡萄糖的昆虫媒介采采蝇中,()利用脯氨酸通过线粒体呼吸产生ATP。丙氨酸是脯氨酸消耗的主要副产物之一。我们推测,升高的丙氨酸池对脯氨酰-tRNA合成酶(ProRS)构成挑战,ProRS是一种已知在生命的所有三个域中都会错误激活丙氨酸的ARS,导致高水平的错误氨酰化Ala-tRNA。()编码两个结构域,它们是氨酰-tRNA去酰基酶INS超家族的成员。一个同源物附加到ProRS的N端,另一个是多氨酰-tRNA合成酶复合物(MSC)相关蛋白3(MCP3)的主要结构域。ProRS和MCP3都存在于MSC中。在这里,我们纯化了ProRS和MCP3,并观察到这两种酶都具有强大的Ala-tRNA去酰基化活性。用于探测MCP3寡聚化状态的尺寸排阻色谱多角度光散射显示,尽管其独特的N端延伸在没有tRNA的情况下赋予同二聚化,但该蛋白作为单体与tRNA结合。动力学分析表明,单独的MCP3具有宽松的tRNA特异性,并能随意水解同源Ala-tRNA;在同样存在于MSC中的丙氨酰-tRNA合成酶存在的情况下,这种活性会显著降低。综上所述,我们的结果为()的翻译保真机制提供了见解,并为探索将MSC相关蛋白作为新型药物靶点奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd1a/11286415/86d61116be16/fmicb-15-1445687-g001.jpg

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