嗜盐条件下烷烃降解菌HF10的全基因组序列
Complete genome sequence of HF10, an alkane-degrading bacterium under hypersaline conditions.
作者信息
Zheng Jie, Yu Bo
机构信息
Department of Microbial Physiological & Metabolic Engineering, State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.
University of Chinese Academy of Sciences, Beijing, China.
出版信息
Microbiol Resour Announc. 2024 Sep 10;13(9):e0005024. doi: 10.1128/mra.00050-24. Epub 2024 Jul 31.
Abstract
We report the complete genome sequence of HF10, an alkane-degrading strain isolated from the sediments of ocean in Xiamen, China, with a high salt tolerance potential of more than 10%. Its genome is composed of a 4.76-Mb chromosome.
摘要
我们报道了HF10的全基因组序列，这是一株从中国厦门海洋沉积物中分离出的烷烃降解菌株，具有超过10%的高耐盐潜力。其基因组由一条4.76 Mb的染色体组成。
相似文献
1
Complete genome sequence of HF10, an alkane-degrading bacterium under hypersaline conditions.嗜盐条件下烷烃降解菌HF10的全基因组序列
Microbiol Resour Announc. 2024 Sep 10;13(9):e0005024. doi: 10.1128/mra.00050-24. Epub 2024 Jul 31.
2
A comparative genomic study of a hydrocarbon-degrading marine bacterial consortium.一个降解烃类的海洋细菌群落的比较基因组学研究。
PLoS One. 2024 Aug 8;19(8):e0303363. doi: 10.1371/journal.pone.0303363. eCollection 2024.
3
Complete genome sequence of sp. strain PD04, a pyridine-degrading bacterium under hypersaline condition.嗜盐吡啶降解菌sp.菌株PD04的全基因组序列
Microbiol Resour Announc. 2024 Jul 18;13(7):e0010324. doi: 10.1128/mra.00103-24. Epub 2024 Jun 11.
4
The diversity of alkane-degrading bacterial communities in seagrass ecosystem of the South China Sea.南海海草生态系统中烷烃降解细菌群落的多样性。
Ecotoxicology. 2021 Nov;30(9):1799-1807. doi: 10.1007/s10646-021-02450-1. Epub 2021 Jul 15.
5
Genome sequence of an alkane-degrading bacterium, Alcanivorax pacificus type strain W11-5, isolated from deep sea sediment.从深海沉积物中分离到的烷烃降解细菌 Alcanivorax pacificus 模式菌株 W11-5 的基因组序列。
J Bacteriol. 2012 Dec;194(24):6936. doi: 10.1128/JB.01845-12.
6
Complete genome sequence of Thalassolituus oleivorans R6-15, an obligate hydrocarbonoclastic marine bacterium from the Arctic Ocean.来自北冰洋的专性嗜烃海洋细菌嗜油嗜温盐菌R6-15的全基因组序列
Stand Genomic Sci. 2014 Mar 1;9(3):893-901. doi: 10.4056/sigs.5229330. eCollection 2014 Jun 15.
7
Complete Genome Sequence of sp. Strain SP3-1, an Extremely Halophilic, Glycoside Hydrolase- and Bacteriocin-Producing Bacterium Isolated from a Salt Evaporation Pond.嗜盐芽孢杆菌属菌株SP3-1的全基因组序列，该菌株是从盐蒸发池中分离出的一种极端嗜盐、能产生糖苷水解酶和细菌素的细菌。
Microbiol Resour Announc. 2019 Feb 14;8(7). doi: 10.1128/MRA.01696-18. eCollection 2019 Feb.
8
Isolation and complete genome sequence of Halorientalis hydrocarbonoclasticus sp. nov., a hydrocarbon-degrading haloarchaeon.解烃嗜盐古菌新种——解烃东方嗜盐菌的分离及全基因组序列
Extremophiles. 2017 Nov;21(6):1081-1090. doi: 10.1007/s00792-017-0968-5. Epub 2017 Oct 9.
9
assessment of crude oil degradation by and isolated from the coast of Ghana.对从加纳海岸分离出的[具体内容缺失]降解原油的评估。
Heliyon. 2024 Jan 22;10(3):e24994. doi: 10.1016/j.heliyon.2024.e24994. eCollection 2024 Feb 15.
10
Complete genome sequence and comparative genome analysis of Alcanivorax sp. IO_7, a marine alkane-degrading bacterium isolated from hydrothermally-influenced deep seawater of southwest Indian ridge.一株海洋烷烃降解菌 Alcanivorax sp. IO_7 的全基因组序列及比较基因组分析，该菌分离自西南印度洋脊热液影响的深海海水。
Genomics. 2021 Jan;113(1 Pt 2):884-891. doi: 10.1016/j.ygeno.2020.10.020. Epub 2020 Oct 20.
本文引用的文献
1
Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming.Porechop_ABI：在牛津纳米孔技术测序读数中发现未知接头以便进行下游修剪。
Bioinform Adv. 2022 Nov 21;3(1):vbac085. doi: 10.1093/bioadv/vbac085. eCollection 2023.
2
SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data.SOAPnuke：一种基于 MapReduce 加速的高通量测序数据集成质量控制和预处理软件。
Gigascience. 2018 Jan 1;7(1):1-6. doi: 10.1093/gigascience/gix120.
3
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
4
Enzymes and genes involved in aerobic alkane degradation.参与有氧烷烃降解的酶和基因。
Front Microbiol. 2013 May 28;4:116. doi: 10.3389/fmicb.2013.00116. eCollection 2013.
5
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.GeneMarkS：一种用于预测微生物基因组中基因起始位点的自训练方法。对在调控区域中寻找序列基序的启示。
Nucleic Acids Res. 2001 Jun 15;29(12):2607-18. doi: 10.1093/nar/29.12.2607.
6
Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactant-producing marine bacterium.博氏食烷菌属，新属，新种，一种新型的、可降解碳氢化合物并产生表面活性剂的海洋细菌。
Int J Syst Bacteriol. 1998 Apr;48 Pt 2:339-48. doi: 10.1099/00207713-48-2-339.
Zotero 插件