Cheng Kun, Zhai Qixuan, Song Jieqiong, Liu Bing
Department of Cardiovascular Surgery, Zibo Central Hospital, Shandong Province, China.
Department of Blood Transfusion, Zibo Central Hospital, Shandong Province, China.
Anatol J Cardiol. 2024 Aug;28(8):381-392. doi: 10.14744/AnatolJCardiol.2024.4331.
We aimed to find a gene for coronary artery disease (CAD) early diagnosis by detecting co-pathogenic target gene involved in CAD and pulmonary arterial hypertension (PAH). Methods: Datasets were obtained from the Gene Expression Omnibus (GEO) database, including GSE113079, GSE113439, and GSE12288, to investigate gene expression patterns in cardiovascular diseases. Weighted Gene Co-expression Network Analysis (WGCNA) was performed to identify gene modules associated with clinical traits. Differential gene expression analysis and functional enrichment analysis were carried out. Protein-protein interaction (PPI) networks were constructed. JASPAR database and FIMO tool were utilized to predict transcription factor (TF) binding sites. Results: Fifteen key genes were identified in CAD and PAH, with CNTN1 being prioritized for further investigation due to its high connectivity degree. Upstream regulation analysis identified potential TFs (DRGX, HOXD3, and RAX) and 7 miRNAs targeting CNTN1. The expression profile of CNTN1 was significantly upregulated in CAD samples, and ROC analysis indicated potential diagnostic value for CAD. CMap database analysis predicted potential targeted drugs for CAD. Conclusion: CNTN1 was detected as a co-pathogenetic gene for CAD and PAH. It is highly expressed in CAD patients and has potential value for CAD diagnosis. CNTN1 is potentially regulated by 3 TFs and 7 miRNAs.
我们旨在通过检测参与冠状动脉疾病(CAD)和肺动脉高压(PAH)的共同致病靶基因,寻找用于CAD早期诊断的基因。
从基因表达综合数据库(GEO)获取数据集,包括GSE113079、GSE113439和GSE12288,以研究心血管疾病中的基因表达模式。进行加权基因共表达网络分析(WGCNA)以识别与临床特征相关的基因模块。开展差异基因表达分析和功能富集分析。构建蛋白质-蛋白质相互作用(PPI)网络。利用JASPAR数据库和FIMO工具预测转录因子(TF)结合位点。
在CAD和PAH中鉴定出15个关键基因,由于CNTN1的连接度高,因此被优先进行进一步研究。上游调控分析确定了潜在的TF(DRGX、HOXD3和RAX)以及7个靶向CNTN1的miRNA。CAD样本中CNTN1的表达谱显著上调,ROC分析表明其对CAD具有潜在诊断价值。CMap数据库分析预测了CAD的潜在靶向药物。
CNTN1被检测为CAD和PAH的共同致病基因。它在CAD患者中高表达,对CAD诊断具有潜在价值。CNTN1可能受3个TF和7个miRNA调控。