Fu Liuhui, Upadhyay Rabi, Pokrovskii Maria, Chen Francis M, Romero-Meza Gabriela, Griesemer Adam, Littman Dan R
Department of Cell Biology, New York University School of Medicine, New York, NY, USA.
Perlmutter Cancer Center, NYU Langone Health, New York, NY, USA.
bioRxiv. 2025 Mar 3:2024.07.23.604803. doi: 10.1101/2024.07.23.604803.
The gastrointestinal tract is continuously exposed to foreign antigens in food and commensal microbes with potential to induce adaptive immune responses. Peripherally induced T regulatory (pTreg) cells are essential for mitigating inflammatory responses to these agents. While RORγt antigen-presenting cells (RORγt-APCs) were shown to program gut microbiota-specific pTreg, their definition remains incomplete, and the APC responsible for food tolerance has remained elusive. Here, we identify a distinct subset of RORγt-APCs, designated tolerogenic dendritic cells (tDC), required for differentiation of both food- and microbiota-specific pTreg cells and for establishment of oral tolerance. tDC development and function require expression of the transcription factors Prdm16 and RORγt, as well as a unique cis-regulatory element. Gene expression, chromatin accessibility, and surface marker analysis establish tDC as myeloid in origin, distinct from ILC3, and sharing epigenetic profiles with classical DC. Upon genetic perturbation of tDC, we observe a substantial increase in food antigen-specific T helper 2 (Th2) cells in lieu of pTreg, leading to compromised tolerance in mouse models of asthma and food allergy. Single-cell analyses of freshly resected mesenteric lymph nodes from a human organ donor, as well as multiple specimens of human intestine and tonsil, reveal candidate tDC with co-expression of and and an extensive transcriptome shared with mice, highlighting an evolutionarily conserved role across species. Our findings suggest that a better understanding of how tDC develop and how they regulate T cell responses to food and microbial antigens could offer new insights into developing therapeutic strategies for autoimmune and allergic diseases as well as organ transplant tolerance.
胃肠道持续暴露于食物中的外来抗原和共生微生物,这些物质有可能诱导适应性免疫反应。外周诱导的调节性T细胞(pTreg)对于减轻对这些物质的炎症反应至关重要。虽然RORγt抗原呈递细胞(RORγt-APC)已被证明可编程肠道微生物群特异性pTreg,但它们的定义仍不完整,负责食物耐受性的APC一直难以捉摸。在这里,我们鉴定出RORγt-APC的一个独特亚群,称为耐受性树突状细胞(tDC),它是食物和微生物群特异性pTreg细胞分化以及建立口服耐受性所必需的。tDC的发育和功能需要转录因子Prdm16和RORγt的表达,以及一个独特的顺式调节元件。基因表达、染色质可及性和表面标志物分析确定tDC起源于髓系,与3型固有淋巴细胞(ILC3)不同,并与经典树突状细胞共享表观遗传特征。在对tDC进行基因扰动后,我们观察到食物抗原特异性辅助性T细胞2(Th2)细胞大量增加,而不是pTreg,导致哮喘和食物过敏小鼠模型中的耐受性受损。对一名人类器官供体新鲜切除的肠系膜淋巴结以及多份人类肠道和扁桃体标本进行单细胞分析,发现候选tDC同时表达特定标志物,并且与小鼠共享广泛的转录组,突出了跨物种进化保守的作用。我们的研究结果表明,更好地了解tDC如何发育以及它们如何调节T细胞对食物和微生物抗原的反应,可能为开发自身免疫性疾病、过敏性疾病以及器官移植耐受性的治疗策略提供新的见解。
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