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半胱氨酸二肽和三肽抗氧化活性的定量构效关系研究:半胱氨酸位置的影响。

Development of QSARs for cysteine-containing di- and tripeptides with antioxidant activity:influence of the cysteine position.

机构信息

Instituto de Física Aplicada (INFAP), CCT - San Luis, CONICET, Universidad Nacional de San Luis, San Luis, 5700, Argentina.

Facultad de Química, Bioquímica y Farmacia, IMIBIO-SL-CONICET, Universidad Nacional de San Luis, San Luis, 5700, Argentina.

出版信息

J Comput Aided Mol Des. 2024 Aug 2;38(1):27. doi: 10.1007/s10822-024-00567-z.

Abstract

Antioxidants agents play an essential role in the food industry for improving the oxidative stability of food products. In the last years, the search for new natural antioxidants has increased due to the potential high toxicity of chemical additives. Therefore, the synthesis and evaluation of the antioxidant activity in peptides is a field of current research. In this study, we performed a Quantitative Structure Activity Relationship analysis (QSAR) of cysteine-containing 19 dipeptides and 19 tripeptides. The main objective is to bring information on the relationship between the structure of peptides and their antioxidant activity. For this purpose, 1D and 2D molecular descriptors were calculated using the PaDEL software, which provides information about the structure, shape, size, charge, polarity, solubility and other aspects of the compounds. Different QSAR model for di- and tripeptides were developed. The statistic parameters for di-peptides model (R = 0.947 and R = 0.804) and for tripeptide models (R = 0.923 and R = 0.847) indicate that the generated models have high predictive capacity. Then, the influence of the cysteine position was analyzed predicting the antioxidant activity for new di- and tripeptides, and comparing them with glutathione. In dipeptides, excepting SC, TC and VC, the activity increases when cysteine is at the N-terminal position. For tripeptides, we observed a notable increase in activity when cysteine is placed in the N-terminal position.

摘要

抗氧化剂在食品工业中起着至关重要的作用,可提高食品产品的氧化稳定性。近年来,由于化学添加剂可能具有较高的毒性,因此人们对新型天然抗氧化剂的研究兴趣日益浓厚。因此,合成和评价肽的抗氧化活性是当前研究的一个领域。在这项研究中,我们对含半胱氨酸的 19 种二肽和 19 种三肽进行了定量构效关系分析(QSAR)。主要目的是提供有关肽结构与其抗氧化活性之间关系的信息。为此,使用 PaDEL 软件计算了 1D 和 2D 分子描述符,该软件提供了有关化合物结构、形状、大小、电荷、极性、溶解度和其他方面的信息。为二肽和三肽分别建立了不同的 QSAR 模型。二肽模型的统计参数(R=0.947 和 R=0.804)和三肽模型的统计参数(R=0.923 和 R=0.847)表明,所生成的模型具有较高的预测能力。然后,分析了半胱氨酸位置的影响,预测了新的二肽和三肽的抗氧化活性,并将其与谷胱甘肽进行了比较。在二肽中,除 SC、TC 和 VC 外,当半胱氨酸位于 N 末端位置时,活性增加。对于三肽,当半胱氨酸位于 N 末端位置时,活性显著增加。

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