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OTMorph:使用神经最优传输的无监督多域腹部医学图像配准

OTMorph: Unsupervised Multi-Domain Abdominal Medical Image Registration Using Neural Optimal Transport.

作者信息

Kim Boah, Zhuang Yan, Mathai Tejas Sudharshan, Summers Ronald M

出版信息

IEEE Trans Med Imaging. 2025 Jan;44(1):165-179. doi: 10.1109/TMI.2024.3437295. Epub 2025 Jan 2.

DOI:10.1109/TMI.2024.3437295
PMID:39093684
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12204211/
Abstract

Deformable image registration is one of the essential processes in analyzing medical images. In particular, when diagnosing abdominal diseases such as hepatic cancer and lymphoma, multi-domain images scanned from different modalities or different imaging protocols are often used. However, they are not aligned due to scanning times, patient breathing, movement, etc. Although recent learning-based approaches can provide deformations in real-time with high performance, multi-domain abdominal image registration using deep learning is still challenging since the images in different domains have different characteristics such as image contrast and intensity ranges. To address this, this paper proposes a novel unsupervised multi-domain image registration framework using neural optimal transport, dubbed OTMorph. When moving and fixed volumes are given as input, a transport module of our proposed model learns the optimal transport plan to map data distributions from the moving to the fixed volumes and estimates a domain-transported volume. Subsequently, a registration module taking the transported volume can effectively estimate the deformation field, leading to deformation performance improvement. Experimental results on multi-domain image registration using multi-modality and multi-parametric abdominal medical images demonstrate that the proposed method provides superior deformable registration via the domain-transported image that alleviates the domain gap between the input images. Also, we attain the improvement even on out-of-distribution data, which indicates the superior generalizability of our model for the registration of various medical images. Our source code is available at https://github.com/boahK/OTMorph.

摘要

可变形图像配准是医学图像分析中的关键步骤之一。特别是在诊断肝癌和淋巴瘤等腹部疾病时,常常会使用从不同模态或不同成像协议扫描得到的多域图像。然而,由于扫描时间、患者呼吸、运动等因素,这些图像并未对齐。尽管最近基于学习的方法能够以高性能实时提供变形,但使用深度学习进行多域腹部图像配准仍然具有挑战性,因为不同域中的图像具有不同的特征,如图像对比度和强度范围。为了解决这个问题,本文提出了一种使用神经最优传输的新型无监督多域图像配准框架,称为OTMorph。当给定移动和固定体积作为输入时,我们提出的模型的传输模块学习最优传输计划,以将数据分布从移动体积映射到固定体积,并估计一个域传输体积。随后,接收传输体积的配准模块可以有效地估计变形场,从而提高变形性能。使用多模态和多参数腹部医学图像进行多域图像配准的实验结果表明,所提出的方法通过减轻输入图像之间的域差距的域传输图像提供了卓越的可变形配准。此外,我们甚至在分布外数据上也取得了改进,这表明我们的模型在各种医学图像配准方面具有卓越的通用性。我们的源代码可在https://github.com/boahK/OTMorph获取。

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本文引用的文献

1
Unsupervised Multi-parametric MRI Registration Using Neural Optimal Transport.使用神经最优传输的无监督多参数磁共振成像配准
Proc SPIE Int Soc Opt Eng. 2024 Feb;12927. doi: 10.1117/12.3006289. Epub 2024 Apr 3.
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TotalSegmentator: Robust Segmentation of 104 Anatomic Structures in CT Images.全段分割器:CT图像中104种解剖结构的稳健分割
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Unsupervised Medical Image Translation With Adversarial Diffusion Models.基于对抗扩散模型的无监督医学图像翻译。
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Is image-to-image translation the panacea for multimodal image registration? A comparative study.图像到图像的翻译是否是多模态图像配准的万能药?一项对比研究。
PLoS One. 2022 Nov 28;17(11):e0276196. doi: 10.1371/journal.pone.0276196. eCollection 2022.
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Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning.Learn2Reg:深度学习时代的综合多任务医学图像配准挑战赛、数据集与评估
IEEE Trans Med Imaging. 2023 Mar;42(3):697-712. doi: 10.1109/TMI.2022.3213983. Epub 2023 Mar 2.
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