Department of Endocrinology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou City, Guangdong Province, China.
Department of Endocrinology, Guangdong Tongjiang Hospital, Foshan City, Guangdong Province, China.
Clinics (Sao Paulo). 2024 Aug 2;79:100436. doi: 10.1016/j.clinsp.2024.100436. eCollection 2024.
This study aimed to perform exhaustive bioinformatic analysis by using GSE29221 micro-array maps obtained from healthy controls and Type 2 Diabetes (T2DM) patients. Raw data are downloaded from the Gene Expression Omnibus database and processed by the limma package in R software to identify Differentially Expressed Genes (DEGs). Gene ontology functional analysis and Kyoto Gene Encyclopedia and Genome Pathway analysis are performed to determine the biological functions and pathways of DEGs. A protein interaction network is constructed using the STRING database and Cytoscape software to identify key genes. Finally, immune infiltration analysis is performed using the Cibersort method. This study has implications for understanding the underlying molecular mechanism of T2DM and provides potential targets for further research.
本研究旨在通过使用从健康对照和 2 型糖尿病 (T2DM) 患者中获得的 GSE29221 微阵列图谱进行详尽的生物信息学分析。原始数据从基因表达综合数据库下载,并通过 R 软件中的 limma 包进行处理,以识别差异表达基因 (DEGs)。进行基因本体功能分析和京都基因与基因组百科全书和基因组通路分析,以确定 DEGs 的生物学功能和通路。使用 STRING 数据库和 Cytoscape 软件构建蛋白质相互作用网络,以识别关键基因。最后,使用 Cibersort 方法进行免疫浸润分析。本研究有助于理解 T2DM 的潜在分子机制,并为进一步的研究提供潜在的靶点。