Institute for Technical Microbiology, Department of Biotechnology, Mannheim University of Applied Sciences, 68163 Mannheim, Germany.
Max-Planck-Institute for Biophysics, Max-von-Laue-Strasse 3, 60438 Frankfurt am Main, Germany.
J Mol Biol. 2024 Oct 15;436(20):168734. doi: 10.1016/j.jmb.2024.168734. Epub 2024 Aug 2.
The antibiotic roseoflavin is a riboflavin (vitamin B) analog. One step of the roseoflavin biosynthetic pathway is catalyzed by the phosphatase RosC, which dephosphorylates 8-demethyl-8-amino-riboflavin-5'-phosphate (AFP) to 8-demethyl-8-amino-riboflavin (AF). RosC also catalyzes the potentially cell-damaging dephosphorylation of the AFP analog riboflavin-5'-phosphate also called "flavin mononucleotide" (FMN), however, with a lower efficiency. We performed X-ray structural analyses and mutagenesis studies on RosC from Streptomyces davaonensis to understand binding of the flavin substrates, the distinction between AFP and FMN and the catalytic mechanism of this enzyme. This work is the first structural analysis of an AFP phosphatase. Each monomer of the RosC dimer consists of an α/β-fold core, which is extended by three specific elongated strand-to-helix sections and a specific N-terminal helix. Altogether these segments envelope the flavin thereby forming a novel flavin-binding site. We propose that distinction between AFP and FMN is provided by substrate-induced rigidification of the four RosC specific supplementary segments mentioned above and by an interaction between the amino group at C8 of AFP and the β-carboxylate of D166. This key amino acid is involved in binding the ring system of AFP and positioning its ribitol phosphate part. Accordingly, site-specific exchanges at D166 disturbed the active site geometry of the enzyme and drastically reduced the catalytic activity. Based on the structure of the catalytic core we constructed a whole series of RosC variants but a disturbing, FMN dephosphorylating "killer enzyme", was not generated.
抗生素玫瑰黄素是核黄素(维生素 B)的类似物。玫瑰黄素生物合成途径的一步由磷酸酶 RosC 催化,该酶将 8-去甲基-8-氨基-核黄素-5'-磷酸(AFP)去磷酸化为 8-去甲基-8-氨基-核黄素(AF)。RosC 还催化潜在细胞损伤的 AFP 类似物核黄素-5'-磷酸(也称为“黄素单核苷酸”(FMN)的去磷酸化,但效率较低。我们对来自链霉菌的 RosC 进行了 X 射线结构分析和突变研究,以了解黄素底物的结合方式、AFP 和 FMN 的区别以及该酶的催化机制。这项工作是对 AFP 磷酸酶的首次结构分析。RosC 二聚体的每个单体都由一个α/β折叠核心组成,该核心通过三个特定的长链到螺旋部分和一个特定的 N 端螺旋进一步扩展。这些片段共同包裹黄素,从而形成一个新的黄素结合位点。我们提出,AFP 和 FMN 的区别是由上述四个 RosC 特定补充片段的底物诱导刚性化以及 AFP 的 C8 上的氨基与 D166 的β-羧基之间的相互作用提供的。这个关键氨基酸参与结合 AFP 的环系统并定位其核糖醇磷酸部分。因此,D166 处的特异性取代会干扰酶的活性位点几何形状,并大大降低催化活性。基于催化核心的结构,我们构建了一系列 RosC 变体,但没有产生令人不安的、FMN 去磷酸化的“杀伤酶”。