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使用基于 MD 和元动力学模拟的工程化镓有机骨架对食品污染物进行选择性检测。

Selective detection of food contaminants using engineered gallium-organic frameworks with MD and metadynamics simulations.

机构信息

Department of Chemistry, University of Birjand, Birjand, Iran.

出版信息

Sci Rep. 2024 Aug 5;14(1):18144. doi: 10.1038/s41598-024-69111-1.

DOI:10.1038/s41598-024-69111-1
PMID:39103470
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11300645/
Abstract

The exclusion mechanism of food contaminants such as bisphenol A (BPA), Flavonoids (FLA), and Goitrin (GOI) onto the novel gallium-metal organic framework (MOF) and functionalized MOF with oxalamide group (MOF-OX) is evaluated by utilizing molecular dynamics (MD) and Metadynamics simulations. The atoms in molecules (AIM) analysis detected different types of atomic interactions between contaminant molecules and substrates. To assess this procedure, a range of descriptors including interaction energies, root mean square displacement, radial distribution function (RDF), density, hydrogen bond count (HB), and contact numbers are examined across the simulation trajectories. The most important elements in the stability of the systems under examination are found to be stacking π-π and HB interactions. It was confirmed by a significant value of total interaction energy for BPA/MOF-OX (- 338.21 kJ mol) and BPA/MOF (- 389.95 kJ mol) complexes. Evaluation of interaction energies reveals that L-J interaction plays an essential role in the adsorption of food contaminants on the substrates. The free energy values for the stability systems of BPA/MOF and BPA/MOF-OX complexes at their global minima reached about BPA/MOF = - 254.29 kJ mol and BPA/MOF-OX = - 187.62 kJ mol, respectively. Nevertheless, this work provides a new strategy for the preparation of a new hierarchical tree-dimensional of the Ga-MOF hybrid material for the adsorption and exclusion of food contaminates and their effect on human health.

摘要

采用分子动力学(MD)和元动力学模拟评估了食品污染物(如双酚 A(BPA)、类黄酮(FLA)和甲状腺原氨酸(GOI))被新型镓金属有机骨架(MOF)和含草酰胺基团的功能化 MOF(MOF-OX)排斥的机制。原子在分子(AIM)分析检测到污染物分子与底物之间存在不同类型的原子相互作用。为了评估这一过程,研究了一系列描述符,包括相互作用能、均方根位移、径向分布函数(RDF)、密度、氢键数(HB)和接触数,这些描述符在模拟轨迹中都有涉及。研究发现,在被考察的体系中,π-π堆积和 HB 相互作用是体系稳定性的最重要因素。通过 BPA/MOF-OX(-338.21 kJ/mol)和 BPA/MOF(-389.95 kJ/mol)复合物的总相互能的显著值证实了这一点。相互能的评估表明,L-J 相互作用在食品污染物吸附到基质上的过程中起着重要作用。BPA/MOF 和 BPA/MOF-OX 复合物在全局最小值处的稳定体系的自由能值分别达到约 BPA/MOF = -254.29 kJ/mol 和 BPA/MOF-OX = -187.62 kJ/mol。尽管如此,这项工作为制备用于吸附和排除食品污染物及其对人类健康影响的新型分级三维 Ga-MOF 杂化材料提供了一种新策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a19/11300645/12d7d02f80a8/41598_2024_69111_Fig11_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a19/11300645/32388c55cd86/41598_2024_69111_Fig2_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a19/11300645/3afd9617cd43/41598_2024_69111_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a19/11300645/744b8ca77a4b/41598_2024_69111_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a19/11300645/5132d3f1f399/41598_2024_69111_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a19/11300645/a069da1d8e33/41598_2024_69111_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a19/11300645/1209b5d497e0/41598_2024_69111_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a19/11300645/12d7d02f80a8/41598_2024_69111_Fig11_HTML.jpg

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