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从代谢角度看多倍体入侵和生活史的出现:来自机制模型的见解。

A metabolic perspective on polyploid invasion and the emergence of life histories: Insights from a mechanistic model.

机构信息

Department of Plant Biotechnology and Bioinformatics, Ghent University, VIB - UGent Center for Plant Systems Biology, B-9052 Ghent, Belgium.

Department of Biology, Terrestrial Ecology Unit, Ghent University, Karel Lodewijk Ledeganckstraat 35, BE-9000 Ghent, Belgium.

出版信息

Am J Bot. 2024 Aug;111(8):e16387. doi: 10.1002/ajb2.16387. Epub 2024 Aug 7.

DOI:10.1002/ajb2.16387
PMID:39113228
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7616395/
Abstract

PREMISE

Whole-genome duplication (WGD, polyploidization) has been identified as a driver of genetic and phenotypic novelty, having pervasive consequences for the evolution of lineages. While polyploids are widespread, especially among plants, the long-term establishment of polyploids is exceedingly rare. Genome doubling commonly results in increased cell sizes and metabolic expenses, which may be sufficient to modulate polyploid establishment in environments where their diploid ancestors thrive.

METHODS

We developed a mechanistic simulation model of photosynthetic individuals to test whether changes in size and metabolic efficiency allow autopolyploids to coexist with, or even invade, ancestral diploid populations. Central to the model is metabolic efficiency, which determines how energy obtained from size-dependent photosynthetic production is allocated to basal metabolism as opposed to somatic and reproductive growth. We expected neopolyploids to establish successfully if they have equal or higher metabolic efficiency as diploids or to adapt their life history to offset metabolic inefficiency.

RESULTS

Polyploid invasion was observed across a wide range of metabolic efficiency differences between polyploids and diploids. Polyploids became established in diploid populations even when they had a lower metabolic efficiency, which was facilitated by recurrent formation. Competition for nutrients is a major driver of population dynamics in this model. Perenniality did not qualitatively affect the relative metabolic efficiency from which tetraploids tended to establish.

CONCLUSIONS

Feedback between size-dependent metabolism and energy allocation generated size and age differences between plants with different ploidies. We demonstrated that even small changes in metabolic efficiency are sufficient for the establishment of polyploids.

摘要

前提

全基因组加倍(WGD,多倍体化)已被确定为遗传和表型新颖性的驱动因素,对谱系的进化产生了广泛的影响。虽然多倍体广泛存在,尤其是在植物中,但多倍体的长期建立却极为罕见。基因组加倍通常会导致细胞大小和代谢费用增加,这可能足以调节多倍体在其二倍体祖先繁衍生息的环境中的建立。

方法

我们开发了一种光合作用个体的机制模拟模型,以测试大小和代谢效率的变化是否允许同源多倍体与祖先的二倍体种群共存,甚至入侵。该模型的核心是代谢效率,它决定了从大小相关的光合作用产物中获得的能量如何分配给基础代谢,而不是体细胞和生殖生长。我们预计,如果新多倍体的代谢效率与二倍体相等或更高,或者它们能够适应其生活史以抵消代谢效率低下的情况,它们将成功建立。

结果

在多倍体和二倍体之间的代谢效率差异很大的情况下,观察到了多倍体的入侵。即使多倍体的代谢效率较低,它们也在二倍体种群中建立起来,这是通过反复形成来实现的。在这个模型中,营养物质的竞争是种群动态的主要驱动因素。多年生性并没有从根本上影响四倍体倾向于建立的相对代谢效率。

结论

大小相关代谢和能量分配之间的反馈产生了不同倍性植物之间的大小和年龄差异。我们证明,即使代谢效率发生微小变化,也足以建立多倍体。

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