Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi, 110025, India.
Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi, 110025, India.
Comput Biol Med. 2024 Sep;180:108987. doi: 10.1016/j.compbiomed.2024.108987. Epub 2024 Aug 7.
Type 2 diabetes mellitus (T2D) has been linked with female infertility (FI). Nevertheless, our understanding of the molecular hallmarks and underlying mechanisms remains elusive. This research article aimed to find the hub genes, pathways, transcription factors, and miRNA involved. For this study, softwares like cytoscape, string, Enrichr, FFL loop, etc., were utilized. This research article employed differentially expressed genes (DEGs) to identify multiple biological targets to understand the association between T2D and female infertility (FI). Between T2D and FI, we found 3869 differentially expressed genes. We have also analyzed different pathways like thyroid hormone signaling pathways, AGE-RAGE signaling pathways in diabetic complications and ubiquitin-mediated proteolysis through pathway analysis. Moreover, hub genes MED17, PRKCG, THRA, FOXO1, NCOA2, PLCG2, COL1A1, CXCL8, PRPF19, ANAPC5, UBE2I, XIAP and KEAP1 have been identified. Additionally, these hub genes were subjected to identify the miRNA-mRNA regulation network specific to T2D-associated female infertility. In the FFL study (Feed Forward Loop), transcription factor (SP1, NFKB1, RELA and FOX01), miRNA (has-mir-7-5p, has-let-7a-5p, hsa-mir-16-5p, hsa-mir-155-5p, has-mir-122-5p, has-let-7b-5p, has-mir-124-3p, has-mir-34a-5p, has-mir-130a-3p, has-let-7i-5p, and hsa-mir-27a-3p) and six genes (XIAP, THRA, NCOA2, MED17, FOXO1, and COL1A1) among the thirteen key genes were recognized as regulator and inhibitor. Our analysis reveals that these genes can serve as a significant biomarker for female infertility linked with Type 2 Diabetes, through the prioritization of candidate genes. This study gives us insight into the molecular and cellular mechanism of T2D-associated FI. This finding helps in developing novel therapeutic approaches and will improve efficacy and reduce side effects of the treatment. This research requires further experimental investigation of the principal targets.
2 型糖尿病(T2D)与女性不孕(FI)有关。然而,我们对其分子特征和潜在机制仍知之甚少。本研究旨在寻找涉及的枢纽基因、途径、转录因子和 miRNA。为此,本研究使用了 Cytoscape、STRING、Enrichr、FFL loop 等软件。本研究采用差异表达基因(DEGs)来识别多个生物靶点,以了解 T2D 与女性不孕(FI)之间的关联。在 T2D 和 FI 之间,我们发现了 3869 个差异表达基因。我们还通过通路分析分析了不同的途径,如甲状腺激素信号通路、糖尿病并发症中的 AGE-RAGE 信号通路和泛素介导的蛋白水解。此外,还鉴定了枢纽基因 MED17、PRKCG、THRA、FOXO1、NCOA2、PLCG2、COL1A1、CXCL8、PRPF19、ANAPC5、UBE2I、XIAP 和 KEAP1。此外,还对这些枢纽基因进行了鉴定,以确定特定于 T2D 相关女性不孕的 miRNA-mRNA 调控网络。在 FFL 研究(Feed Forward Loop)中,鉴定出转录因子(SP1、NFKB1、RELA 和 FOX01)、miRNA(has-mir-7-5p、has-let-7a-5p、hsa-mir-16-5p、hsa-mir-155-5p、has-mir-122-5p、has-let-7b-5p、has-mir-124-3p、has-mir-34a-5p、has-mir-130a-3p、has-let-7i-5p 和 hsa-mir-27a-3p)和 13 个关键基因中的六个基因(XIAP、THRA、NCOA2、MED17、FOXO1 和 COL1A1)作为调节剂和抑制剂。我们的分析表明,这些基因可以作为与 2 型糖尿病相关的女性不孕的重要生物标志物,通过对候选基因的优先级排序。本研究为我们提供了对 T2D 相关 FI 的分子和细胞机制的深入了解。这一发现有助于开发新的治疗方法,并提高治疗的疗效,减少副作用。本研究需要进一步对主要靶点进行实验研究。