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人类帕金蛋白的天然存在的高活性变体。

Naturally occurring hyperactive variants of human parkin.

作者信息

Huq Tahrima Saiha, Luo Jean, Fakih Rayan, Sauvé Véronique, Gehring Kalle

机构信息

Department of Biochemistry, McGill University, Montréal, Canada.

Centre de recherche en biologie structurale, McGill University, Montréal, Canada.

出版信息

Commun Biol. 2024 Aug 8;7(1):961. doi: 10.1038/s42003-024-06656-x.

DOI:10.1038/s42003-024-06656-x
PMID:39117722
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11310320/
Abstract

Parkinson's disease (PD) is the second most common neurodegenerative disease in the world. Although most cases are sporadic and occur later in life, 10-15% of cases are genetic. Loss-of-function mutations in the ring-between-ring E3 ubiquitin ligase parkin, encoded by the PRKN gene, cause autosomal recessive forms of early onset PD. Together with the kinase PINK1, parkin forms a mitochondrial quality control pathway that tags damaged mitochondria for clearance. Under basal conditions, parkin is inhibited and compounds that increase its activity have been proposed as a therapy for PD. Recently, several naturally occurring hyperactive parkin variants were identified, which increased mitophagy in cultured cells. Here, we validate the hyperactivities of these variants in vitro and compare the levels of activity of the variants to those of the wild-type and the well-characterized hyperactive variant, W403A. We also study the effects of mutating the parkin ACT (activating element) on parkin activity in vitro. This work advances our understanding of the pathogenicity of parkin variants and is an important first step in the design of molecules to increase parkin activity.

摘要

帕金森病(PD)是世界上第二常见的神经退行性疾病。尽管大多数病例是散发性的且发生在晚年,但10%-15%的病例是遗传性的。由PRKN基因编码的环状E3泛素连接酶parkin中的功能丧失突变会导致早发性PD的常染色体隐性形式。Parkin与激酶PINK1一起形成线粒体质量控制途径,该途径标记受损线粒体以便清除。在基础条件下,parkin受到抑制,而增加其活性的化合物已被提议作为治疗PD的方法。最近,鉴定出了几种天然存在的高活性parkin变体,它们在培养细胞中增加了线粒体自噬。在这里,我们在体外验证了这些变体的高活性,并将变体的活性水平与野生型和特征明确的高活性变体W403A的活性水平进行了比较。我们还研究了在体外突变parkin ACT(激活元件)对parkin活性的影响。这项工作增进了我们对parkin变体致病性的理解,并且是设计增加parkin活性分子的重要第一步。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a25f/11310320/eecd772a952b/42003_2024_6656_Fig7_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a25f/11310320/3a671b290436/42003_2024_6656_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a25f/11310320/eecd772a952b/42003_2024_6656_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a25f/11310320/f2ccd6f12e53/42003_2024_6656_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a25f/11310320/6ed860caab9d/42003_2024_6656_Fig2_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a25f/11310320/0b4524fb6368/42003_2024_6656_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a25f/11310320/0ddfcf98a39e/42003_2024_6656_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a25f/11310320/3a671b290436/42003_2024_6656_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a25f/11310320/eecd772a952b/42003_2024_6656_Fig7_HTML.jpg

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本文引用的文献

1
A mutational atlas for Parkin proteostasis.Parkin 蛋白稳态的突变图谱
Nat Commun. 2024 Feb 20;15(1):1541. doi: 10.1038/s41467-024-45829-4.
2
Comparative analysis of primate and pig cells reveals primate-specific PINK1 expression and phosphorylation.灵长类动物和猪细胞的比较分析显示,灵长类动物特异性表达和磷酸化的 PINK1。
Zool Res. 2024 Mar 18;45(2):242-252. doi: 10.24272/j.issn.2095-8137.2023.241.
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Accurate proteome-wide missense variant effect prediction with AlphaMissense.使用 AlphaMissense 进行精确的全蛋白质错义变异效应预测。
Science. 2023 Sep 22;381(6664):eadg7492. doi: 10.1126/science.adg7492.
4
Parkinson's disease-linked parkin mutation disrupts recycling of synaptic vesicles in human dopaminergic neurons.帕金森病相关的 parkin 突变破坏了人多巴胺能神经元中突触囊泡的再循环。
Neuron. 2023 Dec 6;111(23):3775-3788.e7. doi: 10.1016/j.neuron.2023.08.018. Epub 2023 Sep 15.
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Structural Mechanisms of Mitochondrial Quality Control Mediated by PINK1 and Parkin.PINK1 和 Parkin 介导的线粒体质量控制的结构机制。
J Mol Biol. 2023 Jun 15;435(12):168090. doi: 10.1016/j.jmb.2023.168090. Epub 2023 Apr 12.
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Structure-based design and characterization of Parkin-activating mutations.基于结构的 Parkin 激活突变设计与鉴定。
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Systematic Functional Analysis of and Coding Variants.对 及 编码变异的系统功能分析。
Cells. 2022 Aug 5;11(15):2426. doi: 10.3390/cells11152426.
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Structure of the second phosphoubiquitin-binding site in parkin.泛素结合结构域 2 中 parkin 的结构。
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Structural basis for feedforward control in the PINK1/Parkin pathway.PINK1/Parkin 通路中前馈控制的结构基础。
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Selective localization of Mfn2 near PINK1 enables its preferential ubiquitination by Parkin on mitochondria.Mfn2 选择性定位于 PINK1 附近,使其在线粒体上优先被 Parkin 泛素化。
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