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基于剪接测序数据的肝细胞癌免疫治疗疗效预测模型。

Prediction Model for Immunotherapy Efficacy in Hepatocellular Carcinoma Based on Alternative Splicing Sequencing Data.

机构信息

Medical School of China PLA, Beijing, China.

The First Medical Centre, Chinese PLA General Hospital, Beijing, China.

出版信息

Technol Cancer Res Treat. 2024 Jan-Dec;23:15330338241265962. doi: 10.1177/15330338241265962.

Abstract

Integrating immune checkpoint inhibitors with multi-target tyrosine kinase inhibitors presents an innovative and hopeful strategy in liver cancer treatment. Nonetheless, a degree of resistance to this treatment is noticeable in certain patients. Alternative splicing (AS) represents a common biological process that controls the variety of life functions via isoforms. Investigating how gene AS affects the effectiveness of combined immunotherapy in treating hepatocellular carcinoma (HCC). Our retrospective examination focused on AS's effect on immune therapy effectiveness, utilizing accessible tissue sequencing and clinical records for HCC. For corroborating our results, we gathered samples of drug-resistant HCC tissue, nearby tissues, HCC tissue with high drug responsiveness, and healthy liver tissue from clinical studies. The study revealed a link between the frequency of AS occurrences, the expression levels of programmed cell death 1 ligand 1, and the resistance to tumor medications. Our study detailed the AS occurrences in HCC, leading to the creation of a risk-assessment function and a predictive model using AS data. The results of our study revealed that the risk score effectively distinguished between various immune subtypes and the effectiveness of immune therapy. Additional examination of the chosen AS occurrences uncovered their effects on both the immune microenvironment and cellular immunity. Our investigation also delved into the regulatory framework of AS, uncovering the role of stringently controlled splicing factors in the emergence of tumors and the modulation of the body's immune response. Increased AS in HCC diminishes the efficacy of immunotherapy; conversely, more AS in peritumoral tissue elevates the likelihood of tumor immune evasion.

摘要

将免疫检查点抑制剂与多靶点酪氨酸激酶抑制剂相结合,为肝癌治疗提供了一种创新且有希望的策略。然而,某些患者对这种治疗存在一定程度的耐药性。选择性剪接(AS)是一种常见的生物学过程,通过异构体控制生命功能的多样性。研究基因 AS 如何影响联合免疫疗法治疗肝细胞癌(HCC)的效果。我们的回顾性研究侧重于 AS 对免疫治疗效果的影响,利用可获得的组织测序和 HCC 的临床记录。为了验证我们的结果,我们从临床研究中收集了耐药 HCC 组织、附近组织、对药物高度敏感的 HCC 组织和健康肝组织的样本。该研究揭示了 AS 发生频率、程序性细胞死亡 1 配体 1 表达水平与肿瘤药物耐药性之间的联系。我们的研究详细描述了 HCC 中的 AS 发生情况,从而创建了一个基于 AS 数据的风险评估功能和预测模型。我们的研究结果表明,风险评分能够有效地区分不同的免疫亚型和免疫治疗的效果。对选定的 AS 发生情况的进一步检查揭示了它们对免疫微环境和细胞免疫的影响。我们的研究还深入探讨了 AS 的调控框架,揭示了严格控制的剪接因子在肿瘤发生和机体免疫反应调节中的作用。HCC 中的 AS 增加会降低免疫治疗的疗效;相反,肿瘤周围组织中的 AS 增加会增加肿瘤免疫逃逸的可能性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57b1/11311179/be1fed2f6a3d/10.1177_15330338241265962-fig1.jpg

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