Mills Emma G, Smith Alexander B, Griffith Marissa P, Hewlett Katharine, Pless Lora, Sundermann Alexander J, Harrison Lee H, Zackular Joseph P, Van Tyne Daria
Division of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
Division of Protective Immunity, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
medRxiv. 2024 Aug 3:2024.08.01.24311290. doi: 10.1101/2024.08.01.24311290.
Vancomycin-resistant (VREfm) is a prevalent healthcare-acquired pathogen. Gastrointestinal colonization can lead to difficult-to-treat bloodstream infections with high mortality rates. Prior studies have investigated VREfm population structure within healthcare centers. However, little is known about how and why hospital-adapted VREfm populations change over time. We sequenced 710 healthcare-associated VREfm clinical isolates from 2017-2022 from a large tertiary care center as part of the Enhanced Detection System for Healthcare-Associated Transmission (EDS-HAT) program. Although the VREfm population in our center was polyclonal, 46% of isolates formed genetically related clusters, suggesting a high transmission rate. We compared our collection to 15,631 publicly available VREfm genomes spanning 20 years. Our findings describe a drastic shift in lineage replacement within nosocomial VREfm populations at both the local and global level. Functional and genomic analysis revealed, antimicrobial peptide, bacteriocin T8 may be a driving feature of strain emergence and persistence in the hospital setting.
耐万古霉素屎肠球菌(VREfm)是一种常见的医疗保健相关病原体。胃肠道定植可导致难以治疗的血流感染,死亡率很高。先前的研究调查了医疗保健中心内的VREfm种群结构。然而,对于适应医院环境的VREfm种群如何以及为何随时间变化知之甚少。作为医疗保健相关传播增强检测系统(EDS-HAT)计划的一部分,我们对2017年至2022年期间来自一家大型三级护理中心的710株医疗保健相关VREfm临床分离株进行了测序。尽管我们中心的VREfm种群是多克隆的,但46%的分离株形成了遗传相关的簇,表明传播率很高。我们将我们的菌株集合与跨越20年的15631个公开可用的VREfm基因组进行了比较。我们的研究结果描述了医院内VREfm种群在本地和全球层面上谱系替代的急剧转变。功能和基因组分析表明,抗菌肽、细菌素T8可能是菌株在医院环境中出现和持续存在的驱动因素。