Judd Jonathan, Spence Jeffrey P, Pritchard Jonathan K, Kachuri Linda, Witte John S
Department of Genetics, Stanford University, Stanford CA.
Department of Biology, Stanford University, Stanford CA.
medRxiv. 2024 Aug 2:2024.07.31.24311312. doi: 10.1101/2024.07.31.24311312.
Genetic factors play an important role in prostate cancer (PCa) development with polygenic risk scores (PRS) predicting disease risk across genetic ancestries. However, there are few convincing modifiable factors for PCa and little is known about their potential interaction with genetic risk. We analyzed incident PCa cases (n=6,155) and controls (n=98,257) of European and African ancestry from the UK Biobank (UKB) cohort to evaluate the role of neighborhood socioeconomic status (nSES)-and how it may interact with PRS-on PCa risk.
We evaluated a multi-ancestry PCa PRS containing 269 genetic variants to understand the association of germline genetics with PCa in UKB. Using the English Indices of Deprivation, a set of validated metrics that quantify lack of resources within geographical areas, we performed logistic regression to investigate the main effects and interactions between nSES deprivation, PCa PRS, and PCa.
The PCa PRS was strongly associated with PCa (OR=2.04; 95%CI=2.00-2.09; P<0.001). Additionally, nSES deprivation indices were inversely associated with PCa: employment (OR=0.91; 95%CI=0.86-0.96; P<0.001), education (OR=0.94; 95%CI=0.83-0.98; P<0.001), health (OR=0.91; 95%CI=0.86-0.96; P<0.001), and income (OR=0.91; 95%CI=0.86-0.96; P<0.001). The PRS effects showed little heterogeneity across nSES deprivation indices, except for the Townsend Index (P=0.03).
We reaffirmed genetics as a risk factor for PCa and identified nSES deprivation domains that influence PCa detection and are potentially correlated with environmental exposures that are a risk factor for PCa. These findings also suggest that nSES and genetic risk factors for PCa act independently.
遗传因素在前列腺癌(PCa)的发生发展中起着重要作用,多基因风险评分(PRS)可预测不同遗传血统人群的疾病风险。然而,PCa的可改变因素较少,且对其与遗传风险的潜在相互作用知之甚少。我们分析了英国生物银行(UKB)队列中欧洲和非洲血统的新发PCa病例(n = 6,155)和对照(n = 98,257),以评估邻里社会经济地位(nSES)的作用,以及它如何与PRS相互作用影响PCa风险。
我们评估了一个包含269个基因变异的多血统PCa PRS,以了解UKB中种系遗传学与PCa的关联。使用英国贫困指数,这是一组经过验证的量化地理区域内资源匮乏程度的指标,我们进行了逻辑回归分析,以研究nSES剥夺、PCa PRS和PCa之间的主要影响和相互作用。
PCa PRS与PCa密切相关(OR = 2.04;95%CI = 2.00 - 2.09;P < 0.001)。此外,nSES剥夺指数与PCa呈负相关:就业(OR = 0.91;95%CI = 0.86 - 0.96;P < 0.001)、教育(OR = 0.94;95%CI = 0.83 - 0.98;P < 0.001)、健康(OR = 0.91;95%CI = 0.86 - 0.96;P < 0.001)和收入(OR = 0.91;95%CI = 0.86 - 0.96;P < 0.001)。除汤森指数(P = 0.03)外,PRS效应在nSES剥夺指数之间几乎没有异质性。
我们再次确认遗传学是PCa的一个风险因素,并确定了影响PCa检测且可能与PCa风险环境暴露相关的nSES剥夺领域。这些发现还表明,PCa的nSES和遗传风险因素独立起作用。