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鉴定和定制一种 γ-谷氨酰转移酶变体的底物特征。

Characterizing and Tailoring the Substrate Profile of a γ-Glutamyltransferase Variant.

机构信息

Department of Biosystems Science and Engineering, ETH Zürich, 4056 Basel, Switzerland.

TESSSI, The European Syndicate of Synthetic Scientists and Industrialists, 75002 Paris, France.

出版信息

ACS Synth Biol. 2024 Sep 20;13(9):2969-2981. doi: 10.1021/acssynbio.4c00364. Epub 2024 Aug 12.

DOI:10.1021/acssynbio.4c00364
PMID:39134057
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11421214/
Abstract

Xenobiology is an emerging field that focuses on the extension and redesign of biological systems through the use of laboratory-derived xenomolecules, which are molecules that are new to the metabolism of the cell. Despite the enormous potential of using xenomolecules in living organisms, most noncanonical building blocks still need to be supplied externally, and often poor uptake into cells limits wider applicability. To improve the cytosolic availability of noncanonical molecules, a synthetic transport system based on portage transport was developed, in which molecules of interest "cargo" are linked to a synthetic transport vector that enables piggyback transport through the alkylsulfonate transporter (SsuABC) of . Upon cytosolic delivery, the vector-cargo conjugate is enzymatically cleaved by GGT, leading to the release of the cargo molecule. To deepen our understanding of the synthetic transport system, we focused on the characterization and further development of the enzymatic cargo release step. Hence, the substrate scope of GGT was characterized using a library of structurally diverse vector-cargo conjugates and MS/MS-based quantification of hydrolysis products in a kinetic manner. The resulting substrate tolerance characterization revealed that vector-amino acid conjugates were significantly unfavored. To overcome this shortcoming, a selection system based on metabolic auxotrophy complementation and directed evolution of GGT was established. In a directed evolution campaign, we improved the enzymatic activity of GGT for vector-amino acid conjugates and revealed the importance of residue D386 in the cargo unloading step.

摘要

异源生物学是一个新兴领域,专注于通过使用实验室衍生的异源分子来扩展和重新设计生物系统,这些异源分子是细胞代谢中全新的分子。尽管在活生物体中使用异源分子具有巨大的潜力,但大多数非规范构建块仍需要外部供应,并且通常细胞摄取不良会限制更广泛的适用性。为了提高非规范分子在细胞质中的可用性,开发了一种基于端口运输的合成运输系统,其中感兴趣的分子“货物”与合成运输载体连接,使货物能够通过烷基磺酸盐转运蛋白(SsuABC)进行载体运输。在细胞质内递送后,载体-货物缀合物被 GGT 酶促切割,导致货物分子释放。为了更深入地了解合成运输系统,我们专注于对酶促货物释放步骤的表征和进一步开发。因此,使用结构多样的载体-货物缀合物文库对 GGT 的底物范围进行了表征,并通过 MS/MS 以动力学方式对水解产物进行定量分析。由此产生的底物耐受性表征表明,载体-氨基酸缀合物明显不受青睐。为了克服这一缺点,建立了基于代谢营养缺陷互补和 GGT 定向进化的选择系统。在定向进化运动中,我们提高了 GGT 对载体-氨基酸缀合物的酶活性,并揭示了残基 D386 在货物卸载步骤中的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a186/11421214/08f70f36fcc4/sb4c00364_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a186/11421214/bcad5904be08/sb4c00364_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a186/11421214/b9cf6a78bf97/sb4c00364_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a186/11421214/94a9b7f593e5/sb4c00364_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a186/11421214/81a48334a8c7/sb4c00364_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a186/11421214/08f70f36fcc4/sb4c00364_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a186/11421214/bcad5904be08/sb4c00364_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a186/11421214/b9cf6a78bf97/sb4c00364_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a186/11421214/94a9b7f593e5/sb4c00364_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a186/11421214/81a48334a8c7/sb4c00364_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a186/11421214/08f70f36fcc4/sb4c00364_0005.jpg

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