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通过计算机驱动鉴定抗白色念珠菌的抗真菌蛋白(AFPs)并进行实验验证。

In silico-driven identification and experimental confirmation of antifungal proteins (AFPs) against Candidaalbicans.

作者信息

Prusty Jyoti Sankar, Kumar Awanish

机构信息

Department of Biotechnology, National Institute of Technology, Raipur, 492010, CG, India.

Department of Biotechnology, National Institute of Technology, Raipur, 492010, CG, India.

出版信息

Biochimie. 2025 Jan;228:44-57. doi: 10.1016/j.biochi.2024.08.007. Epub 2024 Aug 10.

Abstract

Mycoses infect millions of people annually across the world. The most common mycosis agent, Candida albicans is responsible for a great deal of illness and death. C. albicans infection is becoming more widespread and the current antifungals polyenes, triazoles, and echinocandins are less efficient against it. Investigating antifungal peptides (AFPs) as therapeutic is gaining momentum. Therefore, we used MALDI-TOF/MS analysis to identify AFPs and protein-protein docking to analyze their interactions with the C. albicans target protein. Some microorganisms with strong antifungal action against C. albicans were selected for the isolation of AFPs. Using MALDI-TOF/MS, we identified 3 AFPs Chitin binding protein (ACW83017.1; Bacillus licheniformis), the bifunctional protein GlmU (BBQ13478.1; Stenotrophomonas maltophilia), and zinc metalloproteinase aureolysin (BBA25172.1; Staphylococcus aureus). These AFPs showed robust interactions with C. albicans target protein Sap5. We deciphered some important residues in identified APFs and highlighted interaction with Sap5 through hydrogen bonds, protein-protein interactions, and salt bridges using protein-protein docking and MD simulations. The three discovered AFPs-Sap5 complexes exhibit different levels of stability, as seen by the RMSD analysis and interaction patterns. Among protein-protein interactions, the remarkable stability of the BBQ25172.1-2QZX complex highlights the role of salt bridges and hydrogen bonds. Identified AFPs could be further studied for developing successful antifungal candidates and peptide-based new antifungal therapeutic strategies as fresh insights into addressing antifungal resistance also.

摘要

全世界每年有数百万人感染真菌病。最常见的真菌病原体白色念珠菌导致了大量疾病和死亡。白色念珠菌感染正变得越来越普遍,而目前的抗真菌药物多烯类、三唑类和棘白菌素类对其疗效较低。研究抗真菌肽(AFP)作为治疗手段正越来越受到关注。因此,我们使用基质辅助激光解吸电离飞行时间质谱(MALDI-TOF/MS)分析来鉴定AFP,并通过蛋白质-蛋白质对接分析它们与白色念珠菌靶蛋白的相互作用。选择了一些对白色念珠菌具有强大抗真菌作用的微生物来分离AFP。通过MALDI-TOF/MS,我们鉴定出了3种AFP:几丁质结合蛋白(ACW83017.1;地衣芽孢杆菌)、双功能蛋白GlmU(BBQ13478.1;嗜麦芽窄食单胞菌)和锌金属蛋白酶奥雷溶素(BBA25172.1;金黄色葡萄球菌)。这些AFP与白色念珠菌靶蛋白Sap5表现出强烈的相互作用。我们解析了已鉴定的APF中的一些重要残基,并通过蛋白质-蛋白质对接和分子动力学模拟,突出了它们通过氢键、蛋白质-蛋白质相互作用和盐桥与Sap5的相互作用。通过均方根偏差(RMSD)分析和相互作用模式可以看出,三种发现的AFP-Sap5复合物表现出不同程度的稳定性。在蛋白质-蛋白质相互作用中,BBQ25172.1-2QZX复合物的显著稳定性突出了盐桥和氢键的作用。已鉴定的AFP可进一步研究,以开发成功的抗真菌候选药物和基于肽的新型抗真菌治疗策略,这也为解决抗真菌耐药性提供了新的见解。

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