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甜蜜的秘密:探索“聚磷菌属”胞外聚合物中的新型聚糖和糖缀合物

Sweet Secrets: Exploring Novel Glycans and Glycoconjugates in the Extracellular Polymeric Substances of " Accumulibacter".

作者信息

Páez-Watson Timothy, Tomás-Martínez Sergio, de Wit Roeland, Keisham Sunanda, Tateno Hiroaki, van Loosdrecht Mark C M, Lin Yuemei

机构信息

Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, Delft 2629 HZ, The Netherlands.

Cellular and Molecular Biotechnology Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Central 6, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan.

出版信息

ACS ES T Water. 2024 Jul 12;4(8):3391-3399. doi: 10.1021/acsestwater.4c00247. eCollection 2024 Aug 9.

DOI:10.1021/acsestwater.4c00247
PMID:39144681
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11320575/
Abstract

Biological wastewater treatment relies on microorganisms that grow as flocs, biofilms, or granules for efficient separation of biomass from cleaned water. This biofilm structure emerges from the interactions between microbes that produce, and are embedded in, extracellular polymeric substances (EPS). The true composition and structure of the EPS responsible for dense biofilm formation are still obscure. We conducted a approach utilizing advanced glycomic techniques to explore the glycan diversity in the EPS from a highly enriched " Accumulibacter" granular sludge. Rare novel sugar monomers such as N-Acetylquinovosamine (QuiNAc) and 2-O-Methylrhamnose (2-OMe-Rha) were identified to be present in the EPS of both enrichments. Further, a high diversity in the glycoprotein structures of said EPS was identified by means of lectin based microarrays. We explored the genetic potential of ". Accumulibacter" high quality metagenome assembled genomes (MAGs) to showcase the shortcoming of bioinformatics based approaches at predicting EPS composition and structure, especially when dealing with glycans and glycoconjugates. This work suggests that more research is necessary to understand the composition and complex structure of EPS in biofilms since genome based inference cannot directly predict glycan structures and glycoconjugate diversity.

摘要

生物废水处理依赖于以絮体、生物膜或颗粒形式生长的微生物,以便从净化水中有效分离生物质。这种生物膜结构源自产生并嵌入胞外聚合物(EPS)的微生物之间的相互作用。负责形成致密生物膜的EPS的真实组成和结构仍然不清楚。我们采用先进的糖组学技术进行了一项研究,以探索来自高度富集的“聚磷菌属”颗粒污泥的EPS中的聚糖多样性。在两种富集物的EPS中都鉴定出了罕见的新型糖单体,如N-乙酰奎诺糖胺(QuiNAc)和2-O-甲基鼠李糖(2-OMe-Rha)。此外,通过基于凝集素的微阵列鉴定出所述EPS的糖蛋白结构具有高度多样性。我们探索了“聚磷菌属”高质量宏基因组组装基因组(MAGs)的遗传潜力,以展示基于生物信息学的方法在预测EPS组成和结构方面的不足,特别是在处理聚糖和糖缀合物时。这项工作表明,由于基于基因组的推断不能直接预测聚糖结构和糖缀合物多样性,因此需要更多的研究来了解生物膜中EPS的组成和复杂结构。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0270/11320575/a5fea6dd055c/ew4c00247_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0270/11320575/27987f735227/ew4c00247_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0270/11320575/d1352d48c286/ew4c00247_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0270/11320575/eb83243c02e4/ew4c00247_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0270/11320575/cb01df895490/ew4c00247_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0270/11320575/a5fea6dd055c/ew4c00247_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0270/11320575/27987f735227/ew4c00247_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0270/11320575/d1352d48c286/ew4c00247_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0270/11320575/eb83243c02e4/ew4c00247_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0270/11320575/cb01df895490/ew4c00247_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0270/11320575/a5fea6dd055c/ew4c00247_0005.jpg

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本文引用的文献

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Water Res. 2024 Feb 15;250:121028. doi: 10.1016/j.watres.2023.121028. Epub 2023 Dec 17.
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Metaproteomics, metagenomics and 16S rRNA sequencing provide different perspectives on the aerobic granular sludge microbiome.代谢组学、宏基因组学和 16S rRNA 测序为好氧颗粒污泥微生物组提供了不同的视角。
Water Res. 2023 Nov 1;246:120700. doi: 10.1016/j.watres.2023.120700. Epub 2023 Oct 6.
3
Sialylation and Sulfation of Anionic Glycoconjugates Are Common in the Extracellular Polymeric Substances of Both Aerobic and Anaerobic Granular Sludges.
阴离子糖缀合物的唾液酸化和硫酸化在好氧和厌氧颗粒污泥的细胞外聚合物质中很常见。
Environ Sci Technol. 2023 Sep 5;57(35):13217-13225. doi: 10.1021/acs.est.2c09586. Epub 2023 Aug 21.
4
Chemical tools to study bacterial glycans: a tale from discovery of glycoproteins to disruption of their function.研究细菌聚糖的化学工具:从糖蛋白的发现到其功能破坏的故事
Isr J Chem. 2023 Feb;63(1-2). doi: 10.1002/ijch.202200050. Epub 2022 Oct 18.
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Genetic potential for exopolysaccharide synthesis in activated sludge bacteria uncovered by genome-resolved metagenomics.基因组解析宏基因组学揭示活性污泥细菌胞外多糖合成的遗传潜力。
Water Res. 2023 Feb 1;229:119485. doi: 10.1016/j.watres.2022.119485. Epub 2022 Dec 12.
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