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宫颈癌患者中铁死亡相关预后基因特征的鉴定与验证

Identification and validation of ferroptosis-related prognostic gene signature in patients with cervical cancer.

作者信息

Ruan Xiao-Feng, Wen Dan-Ting, Xu Zheng, Du Ting-Ting, Fan Zhao-Feng, Zhu Fang-Fang, Xiao Jing

机构信息

Department of Gynecology, The Second Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, China.

Liu Pai Chinese Medical Center, The Seventh Clinical Medical College of Guangzhou University of Chinese Medicine, Shenzhen, China.

出版信息

Transl Cancer Res. 2024 Jul 31;13(7):3382-3396. doi: 10.21037/tcr-23-2402. Epub 2024 Jul 26.

Abstract

BACKGROUND

Ferroptosis is an iron-dependent cell death, which is distinct from the other types of regulated cell death. Considerable studies have demonstrated that ferroptosis is involved in the biological process of various cancers. However, the role of ferroptosis in cervical cancer (CC) remains unclear. This study aims to explore the ferroptosis-related prognostic genes (FRPGs) expression profiles and their prognostic values in CC.

METHODS

The ferroptosis-related genes (FRGs) were obtained from The Cancer Genome Atlas (TCGA) and FerrDb databases. Core FRGs were determined by the Search Tool for the Retrieval of Interacting Genes (STRING) website. FRPGs were identified using univariate and multivariate Cox regressions, and the ferroptosis-related prognostic model was constructed. FRPGs were verified in clinical specimens. The relationship between FRPGs and tumor infiltrating immune cells were assessed through the CIBERSORT algorithm and the LM22 signature matrix. Bioinformatics functions of FRPGs were explored with the Database for Annotation, Visualization, and Integrated Discovery (DAVID).

RESULTS

Thirty-three significantly up-regulated and 28 down-regulated FRGs were screened from databases [P<0.05; false discovery rate (FDR) <0.05; and |log fold change (FC)| ≥2]. Twenty-four genes were found closely interacting with each other and regarded as hub genes (degree ≥3). Solute carrier family 2 member 1 (SLC2A1), carbonic anhydrases IX (CA9), and dual oxidase 1 (DUOX1) were identified as independent prognostic signatures for overall survival (OS) in a Cox regression. Time-dependent receiver operating characteristic (ROC) curves showed the predictive ability of the ferroptosis-related prognostic model, especially for 1-year OS [area under the curve (AUC) =0.76]. Consistent with the public data, our experiments demonstrated that the mRNA levels of SLC2A1 and DUOX1, and the protein levels of SLC2A1, DUOX1, and CA9 were significantly higher in the tumor tissues. Further analysis showed that there was a significant difference in the proportion of tumor infiltrating immune cells between the low- and high-risk group based on our prognostic model. The function enrichment of FRPGs was explored by applying Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses.

CONCLUSIONS

In this study, the features of FRPGs in CC were pictured. The results implicated that targeting ferroptosis may be a new reliable biomarker and an alternative therapy for CC.

摘要

背景

铁死亡是一种铁依赖性细胞死亡,与其他类型的程序性细胞死亡不同。大量研究表明,铁死亡参与了多种癌症的生物学过程。然而,铁死亡在宫颈癌(CC)中的作用仍不清楚。本研究旨在探讨铁死亡相关预后基因(FRPGs)的表达谱及其在CC中的预后价值。

方法

从癌症基因组图谱(TCGA)和FerrDb数据库中获取铁死亡相关基因(FRGs)。通过检索相互作用基因的搜索工具(STRING)网站确定核心FRGs。使用单变量和多变量Cox回归识别FRPGs,并构建铁死亡相关预后模型。在临床标本中验证FRPGs。通过CIBERSORT算法和LM22特征矩阵评估FRPGs与肿瘤浸润免疫细胞之间的关系。使用注释、可视化和综合发现数据库(DAVID)探索FRPGs的生物信息学功能。

结果

从数据库中筛选出33个显著上调和28个下调的FRGs [P<0.05;错误发现率(FDR)<0.05;|log倍数变化(FC)|≥2]。发现24个基因彼此密切相互作用,并被视为枢纽基因(度≥3)。在Cox回归中,溶质载体家族2成员1(SLC2A1)、碳酸酐酶IX(CA9)和双氧化酶1(DUOX1)被确定为总生存期(OS)的独立预后标志物。时间依赖性受试者工作特征(ROC)曲线显示了铁死亡相关预后模型的预测能力,尤其是对1年OS的预测能力[曲线下面积(AUC)=0.76]。与公开数据一致,我们的实验表明,肿瘤组织中SLC2A1和DUOX1的mRNA水平以及SLC2A1、DUOX1和CA9的蛋白水平显著更高。进一步分析表明,根据我们的预后模型,低风险组和高风险组之间肿瘤浸润免疫细胞的比例存在显著差异。通过应用基因本体(GO)富集和京都基因与基因组百科全书(KEGG)通路分析来探索FRPGs 的功能富集。

结论

在本研究中,描绘了CC中FRPGs的特征。结果表明,靶向铁死亡可能是CC一种新的可靠生物标志物和替代疗法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4371/11319947/be690634f20a/tcr-13-07-3382-f1.jpg

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