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涉及硒代半胱氨酸置换的W依赖型甲酸脱氢酶的底物依赖性氧化失活。

Substrate-dependent oxidative inactivation of a W-dependent formate dehydrogenase involving selenocysteine displacement.

作者信息

Vilela-Alves Guilherme, Manuel Rita R, Viegas Aldino, Carpentier Philippe, Biaso Frédéric, Guigliarelli Bruno, Pereira Inês A C, Romão Maria João, Mota Cristiano

机构信息

Associate Laboratory i4HB - Institute for Health and Bioeconomy, NOVA School of Science and Technology, Universidade NOVA de Lisboa 2829-516 Caparica Portugal

UCIBIO, Applied Molecular Biosciences Unit, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa 2829-516 Caparica Portugal.

出版信息

Chem Sci. 2024 Jul 16;15(32):13090-13101. doi: 10.1039/d4sc02394c. eCollection 2024 Aug 14.

Abstract

Metal-dependent formate dehydrogenases are very promising targets for enzyme optimization and design of bio-inspired catalysts for CO reduction, towards innovative strategies for climate change mitigation. For effective application of these enzymes, the catalytic mechanism must be better understood, and the molecular determinants clarified. Despite numerous studies, several doubts persist, namely regarding the role played by the possible dissociation of the SeCys ligand from the Mo/W active site. Additionally, the oxygen sensitivity of these enzymes must also be understood as it poses an important obstacle for biotechnological applications. This work presents a combined biochemical, spectroscopic, and structural characterization of FdhAB (FdhAB) when exposed to oxygen in the presence of a substrate (formate or CO). This study reveals that O inactivation is promoted by the presence of either substrate and involves forming a different species in the active site, captured in the crystal structures, where the SeCys ligand is displaced from tungsten coordination and replaced by a dioxygen or peroxide molecule. This form was reproducibly obtained and supports the conclusion that, although W-FdhAB can catalyse the oxidation of formate in the presence of oxygen for some minutes, it gets irreversibly inactivated after prolonged O exposure in the presence of either substrate.

摘要

依赖金属的甲酸脱氢酶是酶优化和设计用于CO还原的仿生催化剂的非常有前景的目标,有助于实现缓解气候变化的创新策略。为了有效应用这些酶,必须更好地理解其催化机制,并阐明分子决定因素。尽管进行了大量研究,但仍存在一些疑问,特别是关于SeCys配体从Mo/W活性位点可能解离所起的作用。此外,这些酶的氧敏感性也必须加以了解,因为这对生物技术应用构成了重要障碍。这项工作展示了FdhAB在底物(甲酸或CO)存在下暴露于氧气时的生物化学、光谱和结构的综合表征。该研究表明,底物的存在会促进氧失活,并且在活性位点形成不同的物种,这在晶体结构中得以捕获,其中SeCys配体从钨配位中被取代,并被一个双氧或过氧化物分子所取代。这种形式可重复获得,并支持以下结论:尽管W-FdhAB在氧气存在下能在几分钟内催化甲酸氧化,但在底物存在下长时间暴露于氧气后会不可逆地失活。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c51/11323313/0ee36aa8ae4e/d4sc02394c-f1.jpg

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