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从松巴哇马奶中分离出的酵母的生物多样性和益生菌潜力。

Biodiversity and probiotic potential of yeasts isolated from sumbawa horse milk.

机构信息

Research Center for Genetic Engineering, National Research and Innovation Agency (BRIN), KST Soekarno Jl Raya Bogor KM 46, Bogor, 16911, West Java, Indonesia.

Department of Biotechnology, Faculty of Life Sciences and Technology, Sumbawa University of Technology, Sumbawa, Indonesia.

出版信息

Mol Biol Rep. 2024 Aug 16;51(1):911. doi: 10.1007/s11033-024-09828-4.

Abstract

BACKGROUND

The microbial composition of Sumbawa Horse Milk is influenced by various factors, including environmental elements that encompass geographical location, climate, and conditions specific to Sumbawa. This study aimed to determine the biodiversity and genetic diversity of the microbiome of Sumbawa Horse Milk, with an emphasis on yeast.

METHODS

The diversity and group of yeast isolates were evaluated by the sequence-related amplified polymorphism (SRAP) method using ME2F-EM15R (1) and ME2F-EM12R (2) primers. Molecular identification using 18 S rRNA primers was then carried out on nine selected isolates (K_21, K_31, K_42, K_45, K_1, K_6, K_8, K_17, and K_19) to determine the type of yeast. Probiotic candidate tests were carried out on three isolates, namely K_1, K_6 and K_8.

RESULTS

Analysis with NTSYS software on the SRAP results using Primer 1 revealed the presence of two major groups, where Group I was exclusively comprised of K_45 isolate, whereas the other isolates belonged to Group II. On the other hand, analysis with NTSYS software on the SRAP analysis with Primer 2 also showed two major groups with different compositions. Group I consisted of isolates K_39, 38, 37, 36, 35, 34, 33, 31, 29, 28, 27, 26, 25, 24, 23, 22, and 21, while the remaining isolates belonged to Group II. Results of 18 S rRNA analysis demonstrated that K_17 and K_19 had 99.8 and 100% similarity, respectively, and identified as Candida humilis. K_21, K_31, and K_45 were identified as having a 100% similarity to Clavispora lusitaniae, while K_42 had a 99.8% similarity to Candida parapsilosis. Three isolates were identified as belonging to the genus Ogataea, namely Ogataea polymorpha (K_6 and K_8) and Ogataea siamensis (K_1) with similarity of 100% and 99.8%, respectively.

CONCLUSIONS

These findings suggest that the three yeast have potential as probiotics.

摘要

背景

桑马瓦马奶的微生物组成受到多种因素的影响,包括地理位置、气候和桑马瓦特有条件等环境因素。本研究旨在确定桑马瓦马奶微生物组的生物多样性和遗传多样性,重点是酵母。

方法

使用 ME2F-EM15R(1)和 ME2F-EM12R(2)引物的序列相关扩增多态性(SRAP)方法评估酵母分离株的多样性和群体。然后,使用 18S rRNA 引物对 9 个选定的分离株(K_21、K_31、K_42、K_45、K_1、K_6、K_8、K_17 和 K_19)进行分子鉴定,以确定酵母的类型。对 3 个分离株 K_1、K_6 和 K_8 进行益生菌候选试验。

结果

使用引物 1 的 NTSYS 软件对 SRAP 结果进行分析,结果显示存在两个主要群体,其中第一组仅由 K_45 分离株组成,而其他分离株属于第二组。另一方面,使用引物 2 的 NTSYS 软件对 SRAP 分析的结果也显示出两个组成不同的主要群体。第一组由分离株 K_39、38、37、36、35、34、33、31、29、28、27、26、25、24、23 和 22 组成,其余分离株属于第二组。18S rRNA 分析结果表明,K_17 和 K_19 的相似度分别为 99.8%和 100%,鉴定为 Candida humilis。K_21、K_31 和 K_45 被鉴定为 Clavispora lusitaniae,相似度为 100%,而 K_42 与 Candida parapsilosis 的相似度为 99.8%。三个分离株被鉴定为属于 Ogataea 属,即 Ogataea polymorpha(K_6 和 K_8)和 Ogataea siamensis(K_1),相似度为 100%和 99.8%。

结论

这些发现表明,这三种酵母具有作为益生菌的潜力。

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