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入侵害虫杰克贝氏粉蚧(半翅目:粉蚧科)的染色体水平基因组组装。

Chromosome-level genome assembly of the invasive pest Pseudococcus jackbeardsleyi (Hemiptera: Pseudococcidae).

机构信息

Department of Plant Biosecurity, College of Plant Protection, China Agricultural University, Beijing, 100193, China.

Key Laboratory of Surveillance and Management for Plant Quarantine Pests of Ministry of Agriculture and Rural Affairs, Beijing, 100193, China.

出版信息

Sci Data. 2024 Aug 17;11(1):899. doi: 10.1038/s41597-024-03753-8.

Abstract

Among over 2,000 species of mealybugs (Hemiptera: Pseudococcidae), only 13 genomes have been published so far, seriously limiting the researches on the phylogeny and adaptive evolution of this group. The continuous publication of mealybug genomes will significantly facilitate our exploration of the biological characteristics, detrimental attributes, and control strategies of the Pseudococcidae family. Jack Beardsley mealybug (Pseudococcus jackbeardsleyi) as one of the hazardous invasive pests, it could cause enormous losses to the fruit and vegetable industries worldwide. Herein, we combined Nanopore long-read, short-read Illumina and Hi-C sequencing, generating a high-quality chromosome-level genome assembly of P. jackbeardsleyi. The genome size was determined to be 334.818 Mb, which was assembled into 5 linkage groups with a N50 of 67.233 Mb. The BUSCO analysis demonstrated the completeness of the genome assembly and annotation are 95.7% and 92.8%, respectively. The developed high-quality genome will serve as an asset for delving into the genetic mechanisms underlying the invasiveness of P. jackbeardsleyi, thereby offering a crucial theoretical foundation for the prevention and management of Pseudococcidae pests.

摘要

在超过 2000 种粉蚧(半翅目:粉蚧科)中,迄今为止仅发表了 13 个基因组,这严重限制了该类群的系统发育和适应性进化的研究。粉蚧基因组的不断发表将极大地促进我们对粉蚧科生物特性、有害属性和控制策略的探索。杰克·比尔德斯利粉蚧(Pseudococcus jackbeardsleyi)作为一种有害的入侵性害虫,它可能给全球的水果和蔬菜产业造成巨大损失。在此,我们结合纳米孔长读、短读 Illumina 和 Hi-C 测序,生成了 P. jackbeardsleyi 的高质量染色体水平基因组组装。基因组大小确定为 334.818 Mb,组装成 5 个连锁群,N50 为 67.233 Mb。BUSCO 分析表明基因组组装和注释的完整性分别为 95.7%和 92.8%。开发的高质量基因组将成为深入研究 P. jackbeardsleyi 入侵性遗传机制的基础,为粉蚧科害虫的防治提供重要的理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/46e5/11330446/7fb1c216f017/41597_2024_3753_Fig1_HTML.jpg

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